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The map label for this gene is rnfA [H]

Identifier: 239617298

GI number: 239617298

Start: 959201

End: 959794

Strand: Direct

Name: rnfA [H]

Synonym: Kole_0907

Alternate gene names: 239617298

Gene position: 959201-959794 (Clockwise)

Preceding gene: 239617297

Following gene: 239617299

Centisome position: 41.67

GC content: 41.58

Gene sequence:

>594_bases
ATGACGATGGGAATGGGAACAAGATTGTTCTTCATATTTCTTTCCGCTGTATTAGTTAATAACTTTGTTCTTTCAAGGTT
TCTTGGGATATGTCCCTTCCTAGGGGTTTCCAGAAAAGTGGATACAGCTATCGGGATGAGTCTTGCGGTTATTTTCGTTA
TGGTTATGGCTTCCGTGATCACATGGTTGCTGAATGTTCTATTAGTTGCCCTCGGGCTACCATTTTTGACTACCATAGTT
TTTATACTTATTATAGCCGTTCTTGTTCAGTTCGTTGAAATCGTCTTGAAGAAAACCAGTCCTGGACTGTATGAAAGCCT
CGGAATATATCTGCCGCTAATAACCACGAACTGTGCCATTCTTGGTCTTGCTGTTCTCAATGTTCAGCTTGAATACAATC
TGCTGGAAACCATAATAAACTCTGTTGGTGCAGGAATAGGTTTTGCTCTTGCTTTAATAATTTTCTCAACAATTAGGGAA
AGAATGGATCTTGTAGAGTTACCGGAAGCTTTTAAAGGTACCGCAAGCGCTCTCATAACAGCCGGCTTGCTTTCAATGGC
GTTCACAGGATTCCAGGGCCTCGTGAAGCTGTGA

Upstream 100 bases:

>100_bases
TTACATTGCTCTTGGTCTGTTAGCCGGATTGTTCAATTACATCGGTGCAAGAAGGAACAAAGCTTCGAAAGCCAAAGCCG
GAAAGTGAGGTTGAGTGATT

Downstream 100 bases:

>100_bases
GGGGGTATGGTGGATGATAATAGTTTATTCGGCCTTGATTTTAGGAGTTCTAGGTTTTGTTTTCGGTACATTTCTCGCTT
TTGCAGCGGCAAAATTCGCT

Product: electron transport complex, RnfABCDGE type, A subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MTMGMGTRLFFIFLSAVLVNNFVLSRFLGICPFLGVSRKVDTAIGMSLAVIFVMVMASVITWLLNVLLVALGLPFLTTIV
FILIIAVLVQFVEIVLKKTSPGLYESLGIYLPLITTNCAILGLAVLNVQLEYNLLETIINSVGAGIGFALALIIFSTIRE
RMDLVELPEAFKGTASALITAGLLSMAFTGFQGLVKL

Sequences:

>Translated_197_residues
MTMGMGTRLFFIFLSAVLVNNFVLSRFLGICPFLGVSRKVDTAIGMSLAVIFVMVMASVITWLLNVLLVALGLPFLTTIV
FILIIAVLVQFVEIVLKKTSPGLYESLGIYLPLITTNCAILGLAVLNVQLEYNLLETIINSVGAGIGFALALIIFSTIRE
RMDLVELPEAFKGTASALITAGLLSMAFTGFQGLVKL
>Mature_196_residues
TMGMGTRLFFIFLSAVLVNNFVLSRFLGICPFLGVSRKVDTAIGMSLAVIFVMVMASVITWLLNVLLVALGLPFLTTIVF
ILIIAVLVQFVEIVLKKTSPGLYESLGIYLPLITTNCAILGLAVLNVQLEYNLLETIINSVGAGIGFALALIIFSTIRER
MDLVELPEAFKGTASALITAGLLSMAFTGFQGLVKL

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=54.6875, Blast_Score=215, Evalue=1e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 21224; Mature: 21093

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMGMGTRLFFIFLSAVLVNNFVLSRFLGICPFLGVSRKVDTAIGMSLAVIFVMVMASVI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
TWLLNVLLVALGLPFLTTIVFILIIAVLVQFVEIVLKKTSPGLYESLGIYLPLITTNCAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LGLAVLNVQLEYNLLETIINSVGAGIGFALALIIFSTIRERMDLVELPEAFKGTASALIT
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLLSMAFTGFQGLVKL
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TMGMGTRLFFIFLSAVLVNNFVLSRFLGICPFLGVSRKVDTAIGMSLAVIFVMVMASVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
TWLLNVLLVALGLPFLTTIVFILIIAVLVQFVEIVLKKTSPGLYESLGIYLPLITTNCAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LGLAVLNVQLEYNLLETIINSVGAGIGFALALIIFSTIRERMDLVELPEAFKGTASALIT
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLLSMAFTGFQGLVKL
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA