| Definition | Kosmotoga olearia TBF 19.5.1, complete genome. |
|---|---|
| Accession | NC_012785 |
| Length | 2,302,126 |
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The map label for this gene is dinG [C]
Identifier: 239617144
GI number: 239617144
Start: 799233
End: 801740
Strand: Direct
Name: dinG [C]
Synonym: Kole_0748
Alternate gene names: 239617144
Gene position: 799233-801740 (Clockwise)
Preceding gene: 239617143
Following gene: 239617145
Centisome position: 34.72
GC content: 39.39
Gene sequence:
>2508_bases TTGACTCCTCTTAGCGGGAGCGAAAAAAGCTTTTCTGTCAATTTCAAAGAACTTAAAGAGTTTTTGGGGAAGCACCCTGT GTGCTTATTTCCTTTGAATGATGAAACCTACAAATTGTTGTCAAATTATCCCGAAGTTATCGACGAAAACTTTTTGAAGA GGTTTTTAGTTTATCCTACAGGTAAGGAATCCGATAAACATATCAACGAATATCTTCAATTACTTAGCAGTTTTCCTGCC TCACTTACCGATATCCTTCCACATTTTTTTGAAAAAAATGACGGACTTGGAAAATTCCTGCAGATGGGTCTTTCGAGCGG AACGAAAGATTCCAGGTGGGAGGATGAAGTTTGTTCTAACCTCACGAAATTAAAATCCGTCGATCACAAAGGTGCTGACA TAGACCTCATCAAAACTGTGCGAATGGTTTTCAGCGAGGGCGGACTTCTTGAAGACATCCTTGAAGGCTATGAATACAGA CAGGAGCAATTCATGACAGCGCTGGAAATAGCGGAATCCATAGAAGGAAAACAGGGAATAATGATAGAAGCTGGAACAGG TACAGGTAAATCCCTCGCTTATCTAATACCATCTGCTTATTATTCTATTTCCAAAGGCGAACAAATAGTTGTATCCACAA GAACAAGAATGCTTCAGGATCAACTTGCCAGAAAGGATGTTGCAATAGTCAAAAAACTTCCCAATCTCGAAGAGCTTAGA GTCTGGACTCTGAAGGGACGAGAACGTTATTTTTGTCTCAAAAAATATTTCGAAGAACTCGAGTACGCCGTCGGATCAGG AAAATCAAAAAACCGTACAGAGCTCTTTGGAGTTTTATTGTGGTCAATAAAAACCGGAAGCGGCGATTTAGACGAACTGC ACCTTAAAGAAGAGAACAGAAACAGGTTCACAGCAACAAGATTTGAATGCCTCAGAAAGCTTTGTCCTTTTTTCAATAGA TGTCCTTACTACAATTCCAGAGACAACGCTCAAAATGCCGATATAGTGATTACAAACCACTCTCTTCTCTTCAGCGAGGC TCATATACGTCTTGAAGATAGCCGCGAAGGCGAAGATGAACCTATTGGCATGCTTCTTCCAAAATTCAAGGTGTTGATCG TAGACGAAGCCCACGAATTGGAAATGTCACTCACCGAAGCCATGAGTTTTAATCTCGTCCCCCACGAAGCAGTAAGTACC ATTAGAAAGGCTATAAACTGCTCAAAAGATGCGTTAAGAAGCATTAGAAATCATTTTGAACGTTCCTTTCTTGAAGAATT ATGGGGACGTCTGAGAAAGTTCACTGCGGAAATAGAAAAGATCCTCAAAACAATCGTGGTTTCTTACAACAATTGTTCCA CTGATGAAAAACACTCTATTGATAACGAGGAACTGGAAGCGTTGAAAAAGGATATTGGTGAACTTTATACCATTATCCAG AGATTCAGGGCTGTGTTAATTCAATTATTGAGAATGGTGGAAGAGGTTGCCGAAGAAGAGGAAACACCTGTTCTTGAAAA ATTGAATATGGAGTTGAAATCAGTAACTTCAGAGCTTGACGGTTTAATCAGACAACTTTTAGGTTTATCGAGGGAAGAGG ATGGAAGGGTCGTTTATGTCAGAAGAACCGTAACCAACAATGGAAACCATCTGATCATAACATCCGCACCAATTAAAAAT GATCAGCTCATGGCAGCCATTTTCCCTGATGTACCTGTAAAAGTTTTCATATCAGCTACATTGTGGGTATACAGTGGAAG AAGCGATGGATTCAACTACGCCAGAAGAATACTGGGATTGAATGAATCTTTTCATGCAATAAAACTCGGAAGTTCTTTCG ATTTTCAAGAACAACTCAAGTTCTATATCGTGAAGGACATGGCGAAGTACCAGCCTAACAACAGAGAATATCTAAACCAG GGTGCCAATCTAATATCCGAAATGCTCAAAATAGTCAAGGGCAGCGCAATGGTTCTTTTTACTTCTTACAAAGACATGTA CTATGTCATTTCGAAGATTTCAGAGGAACTCCTTGATATTCGACTGCAAATTCAGGAGCCCAATAACAGTCCAACTGCTA TTGTCAATGAACATGTAAATTCGGAAAATTCCGTTATATTCGGTGTAAGAAGTTTCTGGGAAGGGATAGATCTTCCGGGT GAACACTTAAAACTGTTGATTATCTTCAAACTTCCTTTTGAACGTCCCGATGATCCTTTGATAAATGCCAGAATAAAGCA TTACGGAACGAAAAATTACGTTGAAGGATTAAATAAATACTATTATCCCAAGATGATTACAGCATTCCGTCAGGGTATTG GACGGTTGATAAGAACTCGAAATGACAGAGGTGTTCTCGTGGTTCTTGACAACAGAATCGTGGATGGAAACAAAATCTAC TCAAGGAAACTTTTGCGTTCGTTATCACCCGATGTAAAAATAAACGTTATTGATGGTTCAAGAGTCATATCAGAATTAAG GAAATTGAGGAGAACAAAATGGTTCTGA
Upstream 100 bases:
>100_bases CGGGTAAAATCCCGGTCTTTATTTTTGGGGTGATTTTCTGAAGCAAACTATGATTTACCTTTGCAGAGTTTTCAATTATA GAAGGAAACAGAGAGTCTCT
Downstream 100 bases:
>100_bases ACTTTCTCGAAAGATTTTTTCCAAACAGCTGCACCTCTTGTGGTGCAAGAATTCCTGTTCGGAATTTCTTGTGCGAACAC TGTGAAAACCAGATTAAAGG
Product: helicase c2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 835; Mature: 834
Protein sequence:
>835_residues MTPLSGSEKSFSVNFKELKEFLGKHPVCLFPLNDETYKLLSNYPEVIDENFLKRFLVYPTGKESDKHINEYLQLLSSFPA SLTDILPHFFEKNDGLGKFLQMGLSSGTKDSRWEDEVCSNLTKLKSVDHKGADIDLIKTVRMVFSEGGLLEDILEGYEYR QEQFMTALEIAESIEGKQGIMIEAGTGTGKSLAYLIPSAYYSISKGEQIVVSTRTRMLQDQLARKDVAIVKKLPNLEELR VWTLKGRERYFCLKKYFEELEYAVGSGKSKNRTELFGVLLWSIKTGSGDLDELHLKEENRNRFTATRFECLRKLCPFFNR CPYYNSRDNAQNADIVITNHSLLFSEAHIRLEDSREGEDEPIGMLLPKFKVLIVDEAHELEMSLTEAMSFNLVPHEAVST IRKAINCSKDALRSIRNHFERSFLEELWGRLRKFTAEIEKILKTIVVSYNNCSTDEKHSIDNEELEALKKDIGELYTIIQ RFRAVLIQLLRMVEEVAEEEETPVLEKLNMELKSVTSELDGLIRQLLGLSREEDGRVVYVRRTVTNNGNHLIITSAPIKN DQLMAAIFPDVPVKVFISATLWVYSGRSDGFNYARRILGLNESFHAIKLGSSFDFQEQLKFYIVKDMAKYQPNNREYLNQ GANLISEMLKIVKGSAMVLFTSYKDMYYVISKISEELLDIRLQIQEPNNSPTAIVNEHVNSENSVIFGVRSFWEGIDLPG EHLKLLIIFKLPFERPDDPLINARIKHYGTKNYVEGLNKYYYPKMITAFRQGIGRLIRTRNDRGVLVVLDNRIVDGNKIY SRKLLRSLSPDVKINVIDGSRVISELRKLRRTKWF
Sequences:
>Translated_835_residues MTPLSGSEKSFSVNFKELKEFLGKHPVCLFPLNDETYKLLSNYPEVIDENFLKRFLVYPTGKESDKHINEYLQLLSSFPA SLTDILPHFFEKNDGLGKFLQMGLSSGTKDSRWEDEVCSNLTKLKSVDHKGADIDLIKTVRMVFSEGGLLEDILEGYEYR QEQFMTALEIAESIEGKQGIMIEAGTGTGKSLAYLIPSAYYSISKGEQIVVSTRTRMLQDQLARKDVAIVKKLPNLEELR VWTLKGRERYFCLKKYFEELEYAVGSGKSKNRTELFGVLLWSIKTGSGDLDELHLKEENRNRFTATRFECLRKLCPFFNR CPYYNSRDNAQNADIVITNHSLLFSEAHIRLEDSREGEDEPIGMLLPKFKVLIVDEAHELEMSLTEAMSFNLVPHEAVST IRKAINCSKDALRSIRNHFERSFLEELWGRLRKFTAEIEKILKTIVVSYNNCSTDEKHSIDNEELEALKKDIGELYTIIQ RFRAVLIQLLRMVEEVAEEEETPVLEKLNMELKSVTSELDGLIRQLLGLSREEDGRVVYVRRTVTNNGNHLIITSAPIKN DQLMAAIFPDVPVKVFISATLWVYSGRSDGFNYARRILGLNESFHAIKLGSSFDFQEQLKFYIVKDMAKYQPNNREYLNQ GANLISEMLKIVKGSAMVLFTSYKDMYYVISKISEELLDIRLQIQEPNNSPTAIVNEHVNSENSVIFGVRSFWEGIDLPG EHLKLLIIFKLPFERPDDPLINARIKHYGTKNYVEGLNKYYYPKMITAFRQGIGRLIRTRNDRGVLVVLDNRIVDGNKIY SRKLLRSLSPDVKINVIDGSRVISELRKLRRTKWF >Mature_834_residues TPLSGSEKSFSVNFKELKEFLGKHPVCLFPLNDETYKLLSNYPEVIDENFLKRFLVYPTGKESDKHINEYLQLLSSFPAS LTDILPHFFEKNDGLGKFLQMGLSSGTKDSRWEDEVCSNLTKLKSVDHKGADIDLIKTVRMVFSEGGLLEDILEGYEYRQ EQFMTALEIAESIEGKQGIMIEAGTGTGKSLAYLIPSAYYSISKGEQIVVSTRTRMLQDQLARKDVAIVKKLPNLEELRV WTLKGRERYFCLKKYFEELEYAVGSGKSKNRTELFGVLLWSIKTGSGDLDELHLKEENRNRFTATRFECLRKLCPFFNRC PYYNSRDNAQNADIVITNHSLLFSEAHIRLEDSREGEDEPIGMLLPKFKVLIVDEAHELEMSLTEAMSFNLVPHEAVSTI RKAINCSKDALRSIRNHFERSFLEELWGRLRKFTAEIEKILKTIVVSYNNCSTDEKHSIDNEELEALKKDIGELYTIIQR FRAVLIQLLRMVEEVAEEEETPVLEKLNMELKSVTSELDGLIRQLLGLSREEDGRVVYVRRTVTNNGNHLIITSAPIKND QLMAAIFPDVPVKVFISATLWVYSGRSDGFNYARRILGLNESFHAIKLGSSFDFQEQLKFYIVKDMAKYQPNNREYLNQG ANLISEMLKIVKGSAMVLFTSYKDMYYVISKISEELLDIRLQIQEPNNSPTAIVNEHVNSENSVIFGVRSFWEGIDLPGE HLKLLIIFKLPFERPDDPLINARIKHYGTKNYVEGLNKYYYPKMITAFRQGIGRLIRTRNDRGVLVVLDNRIVDGNKIYS RKLLRSLSPDVKINVIDGSRVISELRKLRRTKWF
Specific function: Probable Helicase Involved In DNA Repair And Perhaps Also Replication. [C]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=738, Percent_Identity=23.8482384823848, Blast_Score=139, Evalue=5e-34, Organism=Escherichia coli, GI1788110, Length=240, Percent_Identity=30.8333333333333, Blast_Score=122, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 [H]
Pfam domain/function: PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 96092; Mature: 95961
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLSGSEKSFSVNFKELKEFLGKHPVCLFPLNDETYKLLSNYPEVIDENFLKRFLVYPT CCCCCCCCCCEECCHHHHHHHHCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCC GKESDKHINEYLQLLSSFPASLTDILPHFFEKNDGLGKFLQMGLSSGTKDSRWEDEVCSN CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH LTKLKSVDHKGADIDLIKTVRMVFSEGGLLEDILEGYEYRQEQFMTALEIAESIEGKQGI HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE MIEAGTGTGKSLAYLIPSAYYSISKGEQIVVSTRTRMLQDQLARKDVAIVKKLPNLEELR EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHEE VWTLKGRERYFCLKKYFEELEYAVGSGKSKNRTELFGVLLWSIKTGSGDLDELHLKEENR EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEECCCCCHHHHHCCCCCC NRFTATRFECLRKLCPFFNRCPYYNSRDNAQNADIVITNHSLLFSEAHIRLEDSREGEDE CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEEEEEECEEEECCCCCCCCC PIGMLLPKFKVLIVDEAHELEMSLTEAMSFNLVPHEAVSTIRKAINCSKDALRSIRNHFE CCCEECCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH RSFLEELWGRLRKFTAEIEKILKTIVVSYNNCSTDEKHSIDNEELEALKKDIGELYTIIQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RFRAVLIQLLRMVEEVAEEEETPVLEKLNMELKSVTSELDGLIRQLLGLSREEDGRVVYV HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE RRTVTNNGNHLIITSAPIKNDQLMAAIFPDVPVKVFISATLWVYSGRSDGFNYARRILGL EEEEECCCCEEEEECCCCCCCCEEEEECCCCCHHHEEEEEEEEEECCCCCHHHHHHHHCC NESFHAIKLGSSFDFQEQLKFYIVKDMAKYQPNNREYLNQGANLISEMLKIVKGSAMVLF CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE TSYKDMYYVISKISEELLDIRLQIQEPNNSPTAIVNEHVNSENSVIFGVRSFWEGIDLPG ECHHHHHHHHHHHHHHHHCEEEEEECCCCCCCEEEECCCCCCCCEEEEHHHHHCCCCCCC EHLKLLIIFKLPFERPDDPLINARIKHYGTKNYVEGLNKYYYPKMITAFRQGIGRLIRTR CCEEEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NDRGVLVVLDNRIVDGNKIYSRKLLRSLSPDVKINVIDGSRVISELRKLRRTKWF CCCCEEEEECCEEECCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCC >Mature Secondary Structure TPLSGSEKSFSVNFKELKEFLGKHPVCLFPLNDETYKLLSNYPEVIDENFLKRFLVYPT CCCCCCCCCEECCHHHHHHHHCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCC GKESDKHINEYLQLLSSFPASLTDILPHFFEKNDGLGKFLQMGLSSGTKDSRWEDEVCSN CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH LTKLKSVDHKGADIDLIKTVRMVFSEGGLLEDILEGYEYRQEQFMTALEIAESIEGKQGI HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE MIEAGTGTGKSLAYLIPSAYYSISKGEQIVVSTRTRMLQDQLARKDVAIVKKLPNLEELR EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHEE VWTLKGRERYFCLKKYFEELEYAVGSGKSKNRTELFGVLLWSIKTGSGDLDELHLKEENR EEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEECCCCCHHHHHCCCCCC NRFTATRFECLRKLCPFFNRCPYYNSRDNAQNADIVITNHSLLFSEAHIRLEDSREGEDE CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEEEEEECEEEECCCCCCCCC PIGMLLPKFKVLIVDEAHELEMSLTEAMSFNLVPHEAVSTIRKAINCSKDALRSIRNHFE CCCEECCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH RSFLEELWGRLRKFTAEIEKILKTIVVSYNNCSTDEKHSIDNEELEALKKDIGELYTIIQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RFRAVLIQLLRMVEEVAEEEETPVLEKLNMELKSVTSELDGLIRQLLGLSREEDGRVVYV HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE RRTVTNNGNHLIITSAPIKNDQLMAAIFPDVPVKVFISATLWVYSGRSDGFNYARRILGL EEEEECCCCEEEEECCCCCCCCEEEEECCCCCHHHEEEEEEEEEECCCCCHHHHHHHHCC NESFHAIKLGSSFDFQEQLKFYIVKDMAKYQPNNREYLNQGANLISEMLKIVKGSAMVLF CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE TSYKDMYYVISKISEELLDIRLQIQEPNNSPTAIVNEHVNSENSVIFGVRSFWEGIDLPG ECHHHHHHHHHHHHHHHHCEEEEEECCCCCCCEEEECCCCCCCCEEEEHHHHHCCCCCCC EHLKLLIIFKLPFERPDDPLINARIKHYGTKNYVEGLNKYYYPKMITAFRQGIGRLIRTR CCEEEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NDRGVLVVLDNRIVDGNKIYSRKLLRSLSPDVKINVIDGSRVISELRKLRRTKWF CCCCEEEEECCEEECCHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]