Click here to switch to the map view.

The map label for this gene is comF [H]

Identifier: 239617145

GI number: 239617145

Start: 801731

End: 802360

Strand: Direct

Name: comF [H]

Synonym: Kole_0749

Alternate gene names: 239617145

Gene position: 801731-802360 (Clockwise)

Preceding gene: 239617144

Following gene: 239617146

Centisome position: 34.83

GC content: 39.37

Gene sequence:

>630_bases
ATGGTTCTGAACTTTCTCGAAAGATTTTTTCCAAACAGCTGCACCTCTTGTGGTGCAAGAATTCCTGTTCGGAATTTCTT
GTGCGAACACTGTGAAAACCAGATTAAAGGCCCCCTTCTGGAAAATTTTTCCATTTCTTACATCAATAAAACCTATGCTT
TTTGGTGGTACGAACCTCCCATGAATGACCTTATAAAAGCCTACAAATTTCAGGGAAGGTTTCGTTTAGCCGAGCAATTC
GCTGAGATGCTTTTCAAAATGATTTTCAAATTCAACATAGATGGTACAATTATCCCCGTTCCTACAACGTTTTCAGCGCT
AAGAAAACGCGGTTTTGATACCAACGCTCTAATACTAAAAAAATTAAACAGAAAGCTCGACATCACCGTTTTAAATGCCC
TAACGGCACTAAGGCGCCCAATGCCACAATCAAGATTGTCGGGAAATGATAGGGTAATTTCGGTGAAAGGGAAATTCCAG
CTCGTTAACTCAACATTGAAGCTTCCAGAAAGAGTTATTCTGTTTGACGATGTTATCACTACTGGAGCAACCGTTTCAGA
ATGTGCTAAAATTCTCAAGTCAAACGGTGTCATAGAAATTATAGGAATTTCGCTGGCTAAGAGTCATTAA

Upstream 100 bases:

>100_bases
ACTCAAGGAAACTTTTGCGTTCGTTATCACCCGATGTAAAAATAAACGTTATTGATGGTTCAAGAGTCATATCAGAATTA
AGGAAATTGAGGAGAACAAA

Downstream 100 bases:

>100_bases
CCCCGTAATAAAAAAAGAGGGTCATCAAGACCCTCATAATGGCTGGGAGGGGAGGACTCGAACCTCCACCGGCGGATCCA
GAGTCCGCTGTCCTACCATT

Product: phosphoribosyltransferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MVLNFLERFFPNSCTSCGARIPVRNFLCEHCENQIKGPLLENFSISYINKTYAFWWYEPPMNDLIKAYKFQGRFRLAEQF
AEMLFKMIFKFNIDGTIIPVPTTFSALRKRGFDTNALILKKLNRKLDITVLNALTALRRPMPQSRLSGNDRVISVKGKFQ
LVNSTLKLPERVILFDDVITTGATVSECAKILKSNGVIEIIGISLAKSH

Sequences:

>Translated_209_residues
MVLNFLERFFPNSCTSCGARIPVRNFLCEHCENQIKGPLLENFSISYINKTYAFWWYEPPMNDLIKAYKFQGRFRLAEQF
AEMLFKMIFKFNIDGTIIPVPTTFSALRKRGFDTNALILKKLNRKLDITVLNALTALRRPMPQSRLSGNDRVISVKGKFQ
LVNSTLKLPERVILFDDVITTGATVSECAKILKSNGVIEIIGISLAKSH
>Mature_209_residues
MVLNFLERFFPNSCTSCGARIPVRNFLCEHCENQIKGPLLENFSISYINKTYAFWWYEPPMNDLIKAYKFQGRFRLAEQF
AEMLFKMIFKFNIDGTIIPVPTTFSALRKRGFDTNALILKKLNRKLDITVLNALTALRRPMPQSRLSGNDRVISVKGKFQ
LVNSTLKLPERVILFDDVITTGATVSECAKILKSNGVIEIIGISLAKSH

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 23843; Mature: 23843

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLNFLERFFPNSCTSCGARIPVRNFLCEHCENQIKGPLLENFSISYINKTYAFWWYEPP
CHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECEEEEEEECCC
MNDLIKAYKFQGRFRLAEQFAEMLFKMIFKFNIDGTIIPVPTTFSALRKRGFDTNALILK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCHHHHHH
KLNRKLDITVLNALTALRRPMPQSRLSGNDRVISVKGKFQLVNSTLKLPERVILFDDVIT
HHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEEECCCEEHHHHHCCCCCEEEEHHHHH
TGATVSECAKILKSNGVIEIIGISLAKSH
CCCCHHHHHHHHHCCCEEEEEEEEEECCC
>Mature Secondary Structure
MVLNFLERFFPNSCTSCGARIPVRNFLCEHCENQIKGPLLENFSISYINKTYAFWWYEPP
CHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECEEEEEEECCC
MNDLIKAYKFQGRFRLAEQFAEMLFKMIFKFNIDGTIIPVPTTFSALRKRGFDTNALILK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCHHHHHH
KLNRKLDITVLNALTALRRPMPQSRLSGNDRVISVKGKFQLVNSTLKLPERVILFDDVIT
HHCCCCHHHHHHHHHHHHCCCCHHHCCCCCEEEEEECCCEEHHHHHCCCCCEEEEHHHHH
TGATVSECAKILKSNGVIEIIGISLAKSH
CCCCHHHHHHHHHCCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]