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The map label for this gene is jag [H]

Identifier: 239616661

GI number: 239616661

Start: 282214

End: 282918

Strand: Reverse

Name: jag [H]

Synonym: Kole_0254

Alternate gene names: 239616661

Gene position: 282918-282214 (Counterclockwise)

Preceding gene: 239616662

Following gene: 239616660

Centisome position: 12.29

GC content: 40.71

Gene sequence:

>705_bases
ATGAAAACCGTCGTAGTAAGTGCTCCATCAGTGGATGAAGCAGTAAGACTCGCTCAGATTAAGCTCGATGCCTACGAAGA
CGAAATAGAGGTAAAGGTTATTGAAAAAGGGTCTAAGGGATTTCTTGGAATTTTTGGAGGTAAAGCAACCAAAATCGAGG
CCAAACTTCTTCCTAAATATTTTGAGAGAAAACTATCGGAATACTTGAAAGGAATACTGCACCATTTTGGAGAGGACATC
TATTTCGACGTTACTTTCAACGGGAAAACCTTCAAGGTTATTATTGAGGGCGACAACATCTCAAGATTGATTGGCAGGCA
CGGAAAAACGGTGAGTGCATTGCAACACATCCTGAACATCTATGCCAACAGGCTATCCGATATAAAGGTCAACGTTAGTG
TGGATGTCGGTAATTATAAGAGGGAACGCAGTGAACTTGTAGTTAATATGGCTCACAAAATAGTGAGAAAGGTAAAAAAG
CAAAAGGGTAAGGTGATTCTTGAGCCTATGTTTGCTTTTGAAAGAAGGATAGTCCATGAAATAGTTTCCCAATATGATGG
AGTGAGAAGCTATTCTATAGGGCTTGAACCTTACAGACGAGTAGTTGTGGAATATTCTGGTAACGGCAACGGTAGAAACG
GTGCCAGGAAAAAAACCGGGAGGTTCAAAAATGTCAGAGCGTATAGTAACAGGAAAAGCTCATGA

Upstream 100 bases:

>100_bases
AAATTTGGCATCAAAAAACTAACAGTCAGGGAAGTTCTGGGATTGCCACCAAAACCCGTGAAATAACGCTATGTTAAAGT
TCTGGGAGGTGTACATTTAA

Downstream 100 bases:

>100_bases
CCTGGAAGCTCAGGTTTTTGATAGCGATACTGTAAGAGGGGTAGAGAAGCGCATATTGATTGGCGAAAAACACAATGCTC
CTAATTTTGTAATGAGGCTT

Product: single-stranded nucleic acid binding R3H domain protein

Products: NA

Alternate protein names: SpoIIIJ-associated protein [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MKTVVVSAPSVDEAVRLAQIKLDAYEDEIEVKVIEKGSKGFLGIFGGKATKIEAKLLPKYFERKLSEYLKGILHHFGEDI
YFDVTFNGKTFKVIIEGDNISRLIGRHGKTVSALQHILNIYANRLSDIKVNVSVDVGNYKRERSELVVNMAHKIVRKVKK
QKGKVILEPMFAFERRIVHEIVSQYDGVRSYSIGLEPYRRVVVEYSGNGNGRNGARKKTGRFKNVRAYSNRKSS

Sequences:

>Translated_234_residues
MKTVVVSAPSVDEAVRLAQIKLDAYEDEIEVKVIEKGSKGFLGIFGGKATKIEAKLLPKYFERKLSEYLKGILHHFGEDI
YFDVTFNGKTFKVIIEGDNISRLIGRHGKTVSALQHILNIYANRLSDIKVNVSVDVGNYKRERSELVVNMAHKIVRKVKK
QKGKVILEPMFAFERRIVHEIVSQYDGVRSYSIGLEPYRRVVVEYSGNGNGRNGARKKTGRFKNVRAYSNRKSS
>Mature_234_residues
MKTVVVSAPSVDEAVRLAQIKLDAYEDEIEVKVIEKGSKGFLGIFGGKATKIEAKLLPKYFERKLSEYLKGILHHFGEDI
YFDVTFNGKTFKVIIEGDNISRLIGRHGKTVSALQHILNIYANRLSDIKVNVSVDVGNYKRERSELVVNMAHKIVRKVKK
QKGKVILEPMFAFERRIVHEIVSQYDGVRSYSIGLEPYRRVVVEYSGNGNGRNGARKKTGRFKNVRAYSNRKSS

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 26565; Mature: 26565

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVVVSAPSVDEAVRLAQIKLDAYEDEIEVKVIEKGSKGFLGIFGGKATKIEAKLLPKY
CCEEEEECCCHHHHHHHHHHEEECCCCCEEEEEEECCCCCEEEEECCCCEEEHHHHHHHH
FERKLSEYLKGILHHFGEDIYFDVTFNGKTFKVIIEGDNISRLIGRHGKTVSALQHILNI
HHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEECCCHHHHHHCCCCHHHHHHHHHHH
YANRLSDIKVNVSVDVGNYKRERSELVVNMAHKIVRKVKKQKGKVILEPMFAFERRIVHE
HHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHH
IVSQYDGVRSYSIGLEPYRRVVVEYSGNGNGRNGARKKTGRFKNVRAYSNRKSS
HHHHHCCCEEEEECCCCCEEEEEEECCCCCCCCCCCHHCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MKTVVVSAPSVDEAVRLAQIKLDAYEDEIEVKVIEKGSKGFLGIFGGKATKIEAKLLPKY
CCEEEEECCCHHHHHHHHHHEEECCCCCEEEEEEECCCCCEEEEECCCCEEEHHHHHHHH
FERKLSEYLKGILHHFGEDIYFDVTFNGKTFKVIIEGDNISRLIGRHGKTVSALQHILNI
HHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEECCCHHHHHHCCCCHHHHHHHHHHH
YANRLSDIKVNVSVDVGNYKRERSELVVNMAHKIVRKVKKQKGKVILEPMFAFERRIVHE
HHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHH
IVSQYDGVRSYSIGLEPYRRVVVEYSGNGNGRNGARKKTGRFKNVRAYSNRKSS
HHHHHCCCEEEEECCCCCEEEEEEECCCCCCCCCCCHHCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1487728; 1552862; 7584024; 9384377 [H]