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The map label for this gene is ymdB [C]

Identifier: 239616606

GI number: 239616606

Start: 223726

End: 224289

Strand: Reverse

Name: ymdB [C]

Synonym: Kole_0199

Alternate gene names: 239616606

Gene position: 224289-223726 (Counterclockwise)

Preceding gene: 239616607

Following gene: 239616602

Centisome position: 9.74

GC content: 45.21

Gene sequence:

>564_bases
ATGGTGAAGAGTATTGTATTGGAGGATGGAAAAATAATTCAGATAGTACAGGGCGATATAACTAAAGAAGAAGTGGATGC
CATAGTGAACGCCGCCAACGGTTATCTCAGGCACGGCGGCGGGGTTGCTGGCGCCATTTTAAGGGCTGGGGGGAAGATAA
TACAGGAAGAGAGTGATAGGATTATCAGAAAAAACGGCCCTCTTGAGGTTTCAGAGGTGGCTGTTACCGGTGCCGGGAGT
CTTCATCCTAAGTACATCATTCACGTTCACGGTCCCCGTTACGGACAGGAGAACGTGGAAGAGCTTCTCTATGAGAGCTT
TTTAAATGCGTTTAAAACCGCCGGAAAACTTGGTGTCAAAACCCTGTCAGTTCCAGCGGTATCTTCAGGTATATTTGGTG
TTCCAAAGGATCTTTGCGCACGTTGCTTTTTCAGGGCTGTTGAATATTACTTTGAAAATTACAAGGATACGCCCTTATCG
CTGATACGTGTCTGTAATATCGATAGAGCTACGACGGAGGTTTTTGAAAAGGTATCGGAGGAGTTTTTCAAATTACAACG
TTGA

Upstream 100 bases:

>100_bases
GCAATCTCAGGAGAAAGAGCGAATGAGGATTGCGCCGGTGTTTTACTGCGGCGGGCTGATAACTTGTTTCTGAACTTATC
GATTCTTTGGGGGGATGATG

Downstream 100 bases:

>100_bases
ATACCGTTCTTAAAAGATACCCGATACCGTAAGCCACCGTTGCCGAAAGTCCGCCCACAAGCAACATTTCAAGCCCGCCT
ATGAGCCAGTTTACTCCAGT

Product: Appr-1-p processing domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MVKSIVLEDGKIIQIVQGDITKEEVDAIVNAANGYLRHGGGVAGAILRAGGKIIQEESDRIIRKNGPLEVSEVAVTGAGS
LHPKYIIHVHGPRYGQENVEELLYESFLNAFKTAGKLGVKTLSVPAVSSGIFGVPKDLCARCFFRAVEYYFENYKDTPLS
LIRVCNIDRATTEVFEKVSEEFFKLQR

Sequences:

>Translated_187_residues
MVKSIVLEDGKIIQIVQGDITKEEVDAIVNAANGYLRHGGGVAGAILRAGGKIIQEESDRIIRKNGPLEVSEVAVTGAGS
LHPKYIIHVHGPRYGQENVEELLYESFLNAFKTAGKLGVKTLSVPAVSSGIFGVPKDLCARCFFRAVEYYFENYKDTPLS
LIRVCNIDRATTEVFEKVSEEFFKLQR
>Mature_187_residues
MVKSIVLEDGKIIQIVQGDITKEEVDAIVNAANGYLRHGGGVAGAILRAGGKIIQEESDRIIRKNGPLEVSEVAVTGAGS
LHPKYIIHVHGPRYGQENVEELLYESFLNAFKTAGKLGVKTLSVPAVSSGIFGVPKDLCARCFFRAVEYYFENYKDTPLS
LIRVCNIDRATTEVFEKVSEEFFKLQR

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI226371718, Length=141, Percent_Identity=39.7163120567376, Blast_Score=101, Evalue=4e-22,
Organism=Homo sapiens, GI226371716, Length=141, Percent_Identity=39.7163120567376, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI226371714, Length=141, Percent_Identity=39.7163120567376, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI226371712, Length=141, Percent_Identity=39.7163120567376, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI226371710, Length=141, Percent_Identity=39.7163120567376, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI226371706, Length=141, Percent_Identity=39.7163120567376, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI154813199, Length=183, Percent_Identity=31.1475409836066, Blast_Score=97, Evalue=9e-21,
Organism=Homo sapiens, GI20336746, Length=150, Percent_Identity=34.6666666666667, Blast_Score=93, Evalue=1e-19,
Organism=Homo sapiens, GI13569840, Length=175, Percent_Identity=31.4285714285714, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI93141018, Length=153, Percent_Identity=30.718954248366, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI93141020, Length=153, Percent_Identity=30.718954248366, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI4758496, Length=153, Percent_Identity=30.718954248366, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI8923920, Length=160, Percent_Identity=30, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI117968621, Length=176, Percent_Identity=31.25, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1787283, Length=168, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17538214, Length=162, Percent_Identity=37.6543209876543, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro; PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 20604; Mature: 20604

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKSIVLEDGKIIQIVQGDITKEEVDAIVNAANGYLRHGGGVAGAILRAGGKIIQEESDR
CCCCEEECCCCEEEEECCCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHCCHHHHHHCCH
IIRKNGPLEVSEVAVTGAGSLHPKYIIHVHGPRYGQENVEELLYESFLNAFKTAGKLGVK
HHHCCCCCCHHHEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCE
TLSVPAVSSGIFGVPKDLCARCFFRAVEYYFENYKDTPLSLIRVCNIDRATTEVFEKVSE
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
EFFKLQR
HHHHCCC
>Mature Secondary Structure
MVKSIVLEDGKIIQIVQGDITKEEVDAIVNAANGYLRHGGGVAGAILRAGGKIIQEESDR
CCCCEEECCCCEEEEECCCCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHCCHHHHHHCCH
IIRKNGPLEVSEVAVTGAGSLHPKYIIHVHGPRYGQENVEELLYESFLNAFKTAGKLGVK
HHHCCCCCCHHHEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCE
TLSVPAVSSGIFGVPKDLCARCFFRAVEYYFENYKDTPLSLIRVCNIDRATTEVFEKVSE
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
EFFKLQR
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]