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The map label for this gene is ugpB [H]

Identifier: 239616583

GI number: 239616583

Start: 198050

End: 199315

Strand: Reverse

Name: ugpB [H]

Synonym: Kole_0175

Alternate gene names: 239616583

Gene position: 199315-198050 (Counterclockwise)

Preceding gene: 239616584

Following gene: 239616582

Centisome position: 8.66

GC content: 47.08

Gene sequence:

>1266_bases
ATGAAAAAGCTACTTCTTGTCATTACCATGGTACTTGCATTGTCCATTTTTGCCATGGCTGAGAAGATTGAAGTCGAGTT
CTGGCATGCCATGGGCGGTGGACATGGTAAAGCCCTCGAGGAAATCGTTAACCTCTTCAATGAAACACATCCCGATATCG
AAGTGAAAGCAATTTACGTTGGTAACTACGGGGCATTGTCTCAGAAACTTCTCGCAAGTGCTGAGTCTGGAAATCTCCCG
GTTCTCTCTCAGGCTTACGGAAACTGGACAGCCAAGCTCATCCCGAGAGGCGTTGTTCAGGAACTCGATAGCTTCATAAA
GAATCCAGATTACGGTCTTACTGAAGAACAGTGGGACGCTATCTGGGCACCTTTCAAAAAGATGATCACATGGGGAGACA
CAGTTTACGCCCTTCCGTTCAACAAGAGTACATATGTTCTTTACTACAACACCGATGCCTTCGAGGCTTACGGGCTCCGT
CCGCCTGAAACCGTTGAAGACCTCTTCTTCGATGCTATGATGCTTACAGAAGACAAAGACGGCGATGGAGAAATCGATCA
GTTTGGATTTGGTTTCAGAACAACCATCGACCACTTCGTTGTATTCCTCAGGGCAAACAAGGGAAAGATCATCGAAGTTA
AAGACGATGGTAGCATCGAAATAACCATCAATTCCCCTGAAGCCAAGGAAGCTCTCCAGTTCATGTACGACATGGTTCAC
ACATACAAGATTGCTTACACCCAGGGTGGTTATCTTGATGGTGTTTTCGGCGACGGCAAAATCATGATGTTCATCGAGAC
CATCGCCAGTAAACCCTATGTTGAAAGAGCTTCAACCGGTAAACACGGTTGGGCATGGGCTCCTGTTCCGTTGTGGAAGA
CTCAAGCTCCACCCTTTGCCGGAACAGACCTCATCATGTTCTCCACCGCAAGTGAAGAACAGAAAAAAGCTGCCTGGGAA
TTCATGAAATTCCTCATTAGCCCAGAAATTCAGGCTTACTGGTCAGTCAAGACCGGTTACATGCCCGCTGTTAAGACGGC
TCTTGAAACAGCTCAGTGGAAAGAGTACGTTAAACAGCACCCCGAAGCCATGGTTCCAATCAACCAGATTCCCAAGGGAA
CGACCGATCCTAACATCGCAGAATGGTATGAAGTCAGAAGTGTCATCGGACAGATGGTCGGTGACGTTATGAACAACAAG
AGAACCATAGACGAAGGTCTTGCCTGGGCAGAAGCTGAACTTCACCGCCTTATTTTTGGAGAATAA

Upstream 100 bases:

>100_bases
CCTCAAGAGCTCTTAATCAAGGTTAGGGAAATTTTGCGGGGAAAAGAAATAATGCTATAATAGTTGGCGCAATGCCACTT
CAACAAAGGAGGTAAGGGGT

Downstream 100 bases:

>100_bases
TTAGAATTGTTTCTGATTTGCCGGGAGGCCATCATGGCCTCCCGGTTTTATTAAGTTTATCTTCTTTGGAAAGGGAGGCT
GGAGTTAATAAACGGCAGAG

Product: extracellular solute-binding protein family 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MKKLLLVITMVLALSIFAMAEKIEVEFWHAMGGGHGKALEEIVNLFNETHPDIEVKAIYVGNYGALSQKLLASAESGNLP
VLSQAYGNWTAKLIPRGVVQELDSFIKNPDYGLTEEQWDAIWAPFKKMITWGDTVYALPFNKSTYVLYYNTDAFEAYGLR
PPETVEDLFFDAMMLTEDKDGDGEIDQFGFGFRTTIDHFVVFLRANKGKIIEVKDDGSIEITINSPEAKEALQFMYDMVH
TYKIAYTQGGYLDGVFGDGKIMMFIETIASKPYVERASTGKHGWAWAPVPLWKTQAPPFAGTDLIMFSTASEEQKKAAWE
FMKFLISPEIQAYWSVKTGYMPAVKTALETAQWKEYVKQHPEAMVPINQIPKGTTDPNIAEWYEVRSVIGQMVGDVMNNK
RTIDEGLAWAEAELHRLIFGE

Sequences:

>Translated_421_residues
MKKLLLVITMVLALSIFAMAEKIEVEFWHAMGGGHGKALEEIVNLFNETHPDIEVKAIYVGNYGALSQKLLASAESGNLP
VLSQAYGNWTAKLIPRGVVQELDSFIKNPDYGLTEEQWDAIWAPFKKMITWGDTVYALPFNKSTYVLYYNTDAFEAYGLR
PPETVEDLFFDAMMLTEDKDGDGEIDQFGFGFRTTIDHFVVFLRANKGKIIEVKDDGSIEITINSPEAKEALQFMYDMVH
TYKIAYTQGGYLDGVFGDGKIMMFIETIASKPYVERASTGKHGWAWAPVPLWKTQAPPFAGTDLIMFSTASEEQKKAAWE
FMKFLISPEIQAYWSVKTGYMPAVKTALETAQWKEYVKQHPEAMVPINQIPKGTTDPNIAEWYEVRSVIGQMVGDVMNNK
RTIDEGLAWAEAELHRLIFGE
>Mature_421_residues
MKKLLLVITMVLALSIFAMAEKIEVEFWHAMGGGHGKALEEIVNLFNETHPDIEVKAIYVGNYGALSQKLLASAESGNLP
VLSQAYGNWTAKLIPRGVVQELDSFIKNPDYGLTEEQWDAIWAPFKKMITWGDTVYALPFNKSTYVLYYNTDAFEAYGLR
PPETVEDLFFDAMMLTEDKDGDGEIDQFGFGFRTTIDHFVVFLRANKGKIIEVKDDGSIEITINSPEAKEALQFMYDMVH
TYKIAYTQGGYLDGVFGDGKIMMFIETIASKPYVERASTGKHGWAWAPVPLWKTQAPPFAGTDLIMFSTASEEQKKAAWE
FMKFLISPEIQAYWSVKTGYMPAVKTALETAQWKEYVKQHPEAMVPINQIPKGTTDPNIAEWYEVRSVIGQMVGDVMNNK
RTIDEGLAWAEAELHRLIFGE

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=415, Percent_Identity=24.0963855421687, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47507; Mature: 47507

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLLVITMVLALSIFAMAEKIEVEFWHAMGGGHGKALEEIVNLFNETHPDIEVKAIYV
CHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEE
GNYGALSQKLLASAESGNLPVLSQAYGNWTAKLIPRGVVQELDSFIKNPDYGLTEEQWDA
CCCHHHHHHHHHHCCCCCCCEEHHHHCCCHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHH
IWAPFKKMITWGDTVYALPFNKSTYVLYYNTDAFEAYGLRPPETVEDLFFDAMMLTEDKD
HHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHHHEECCCC
GDGEIDQFGFGFRTTIDHFVVFLRANKGKIIEVKDDGSIEITINSPEAKEALQFMYDMVH
CCCCHHHCCCCHHHHHHHEEEEEECCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHH
TYKIAYTQGGYLDGVFGDGKIMMFIETIASKPYVERASTGKHGWAWAPVPLWKTQAPPFA
HEEEEEECCCEEECEECCCEEEEEEEHHHCCCCHHHCCCCCCCEEECCCCCCCCCCCCCC
GTDLIMFSTASEEQKKAAWEFMKFLISPEIQAYWSVKTGYMPAVKTALETAQWKEYVKQH
CCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHC
PEAMVPINQIPKGTTDPNIAEWYEVRSVIGQMVGDVMNNKRTIDEGLAWAEAELHRLIFG
CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
E
C
>Mature Secondary Structure
MKKLLLVITMVLALSIFAMAEKIEVEFWHAMGGGHGKALEEIVNLFNETHPDIEVKAIYV
CHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEE
GNYGALSQKLLASAESGNLPVLSQAYGNWTAKLIPRGVVQELDSFIKNPDYGLTEEQWDA
CCCHHHHHHHHHHCCCCCCCEEHHHHCCCHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHH
IWAPFKKMITWGDTVYALPFNKSTYVLYYNTDAFEAYGLRPPETVEDLFFDAMMLTEDKD
HHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHHHEECCCC
GDGEIDQFGFGFRTTIDHFVVFLRANKGKIIEVKDDGSIEITINSPEAKEALQFMYDMVH
CCCCHHHCCCCHHHHHHHEEEEEECCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHH
TYKIAYTQGGYLDGVFGDGKIMMFIETIASKPYVERASTGKHGWAWAPVPLWKTQAPPFA
HEEEEEECCCEEECEECCCEEEEEEEHHHCCCCHHHCCCCCCCEEECCCCCCCCCCCCCC
GTDLIMFSTASEEQKKAAWEFMKFLISPEIQAYWSVKTGYMPAVKTALETAQWKEYVKQH
CCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHC
PEAMVPINQIPKGTTDPNIAEWYEVRSVIGQMVGDVMNNKRTIDEGLAWAEAELHRLIFG
CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA