BacMap

Definition	Kosmotoga olearia TBF 19.5.1, complete genome.
Accession	NC_012785
Length	2,302,126

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The map label for this gene is yxlF [H]

Identifier: 239616561

GI number: 239616561

Start: 170546

End: 171406

Strand: Reverse

Name: yxlF [H]

Synonym: Kole_0153

Alternate gene names: 239616561

Gene position: 171406-170546 (Counterclockwise)

Preceding gene: 239616562

Following gene: 239616560

Centisome position: 7.45

GC content: 42.97

Gene sequence:

>861_bases
ATGGAACGAGAAGAAATGAAAGTGATAACCGTCCGGAATCTGAAAAAGACCTATAGAAATGGCGTTGAAGCTGTAAAAGG
GATAGATCTCGACATAGAGCCTCACGAGGTTTGCGCTTTGCTGGGGCCAAACGGTGCGGGTAAAACAACCACTCTCAAAT
CCATTCTTGGTTTTATCAATTATGAAGGGGAGATAAAAGTCTTTGGCAAACCGATTGACGAAGTCAGGGATAGGATCTCA
TTCGTACCGGCAGAGAGGAGTTTTTACGGTTATATGACCCTTTCCAAAGCAATGAAATTCTGTGAGAGATTTCTCCCGAA
TTTTGACAGCAAAAAGAGCCTTGAGATGATAAAACACTTCAGGCTTCCCATGGATAAAAAAATCGCCGGTTTTTCAAGCG
GAATGAAGACAGGGGTATATCTGAGCTTCACACTGGCTCAGGAAGCAGACCTTTACATCCTCGACGAACCGACCTGGGGA
CTCGACCCGATTATGAGAGATGACGTTCTCGAAATGATCAGGGAGAAGGTCATCCAGGGAAAAAGCGTCCTGTACACCTC
CCATATCATCTCCGAAGTCGAAAAAATATCTGACAGGATCTATATAATCGACAAAGGAAAGATACGCTATTCTGGAGCTC
TTGACGGGTTAAAAGAACAGTTTAGAATCTTTTATTTACCAATAGAAGCCATGAAAAAACTGGATAATAGAGATTTCTCC
TCTTTAAGAAAGGTACCCAATAGAATCGTCGTCCTTTCAAAGGACCCTGAAGAATGGGAAGAGCTGGAAAATCTCTCTGA
GATGGAAGGAACCGCTCCGAACCTTGAGGAGTTTTTTCAGTTCCTAATTAGAGGAGAATGA

Upstream 100 bases:

>100_bases
TTATGCTTGAAGACCTTAAAAAAGATTTTCGGGAGATTGTTTCTAAGTCCAGGAGAGCCGGCTTTTCTCTGGACGAGATT
GTGGAGGTGATTAGTAAGAT

Downstream 100 bases:

>100_bases
AGAAGGTGAAACGATGATAGAACTGAAGAATGTTACCAAGGTGTATAGCGGTGGAGTGAAAGCGGTTGATAACCTCTCGC
TTTCGGTTGAAAAGGGAGAG

Product: ABC transporter related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MEREEMKVITVRNLKKTYRNGVEAVKGIDLDIEPHEVCALLGPNGAGKTTTLKSILGFINYEGEIKVFGKPIDEVRDRIS
FVPAERSFYGYMTLSKAMKFCERFLPNFDSKKSLEMIKHFRLPMDKKIAGFSSGMKTGVYLSFTLAQEADLYILDEPTWG
LDPIMRDDVLEMIREKVIQGKSVLYTSHIISEVEKISDRIYIIDKGKIRYSGALDGLKEQFRIFYLPIEAMKKLDNRDFS
SLRKVPNRIVVLSKDPEEWEELENLSEMEGTAPNLEEFFQFLIRGE

Sequences:

>Translated_286_residues
MEREEMKVITVRNLKKTYRNGVEAVKGIDLDIEPHEVCALLGPNGAGKTTTLKSILGFINYEGEIKVFGKPIDEVRDRIS
FVPAERSFYGYMTLSKAMKFCERFLPNFDSKKSLEMIKHFRLPMDKKIAGFSSGMKTGVYLSFTLAQEADLYILDEPTWG
LDPIMRDDVLEMIREKVIQGKSVLYTSHIISEVEKISDRIYIIDKGKIRYSGALDGLKEQFRIFYLPIEAMKKLDNRDFS
SLRKVPNRIVVLSKDPEEWEELENLSEMEGTAPNLEEFFQFLIRGE
>Mature_286_residues
MEREEMKVITVRNLKKTYRNGVEAVKGIDLDIEPHEVCALLGPNGAGKTTTLKSILGFINYEGEIKVFGKPIDEVRDRIS
FVPAERSFYGYMTLSKAMKFCERFLPNFDSKKSLEMIKHFRLPMDKKIAGFSSGMKTGVYLSFTLAQEADLYILDEPTWG
LDPIMRDDVLEMIREKVIQGKSVLYTSHIISEVEKISDRIYIIDKGKIRYSGALDGLKEQFRIFYLPIEAMKKLDNRDFS
SLRKVPNRIVVLSKDPEEWEELENLSEMEGTAPNLEEFFQFLIRGE

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI21536376, Length=229, Percent_Identity=30.5676855895196, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI27477115, Length=257, Percent_Identity=27.6264591439689, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI105990541, Length=227, Percent_Identity=28.6343612334802, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI27881501, Length=225, Percent_Identity=29.3333333333333, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI30795238, Length=225, Percent_Identity=29.3333333333333, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI47078218, Length=217, Percent_Identity=29.0322580645161, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI45446740, Length=217, Percent_Identity=29.0322580645161, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI153792144, Length=259, Percent_Identity=26.6409266409266, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI116734710, Length=266, Percent_Identity=25.187969924812, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI27436953, Length=235, Percent_Identity=26.3829787234043, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI31657092, Length=254, Percent_Identity=26.7716535433071, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI6005701, Length=225, Percent_Identity=27.1111111111111, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI27262624, Length=264, Percent_Identity=23.8636363636364, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27262626, Length=264, Percent_Identity=23.8636363636364, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI150417984, Length=223, Percent_Identity=25.5605381165919, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI90421313, Length=273, Percent_Identity=23.8095238095238, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1786319, Length=298, Percent_Identity=28.1879194630872, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI87081782, Length=226, Percent_Identity=30.9734513274336, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI48994943, Length=223, Percent_Identity=29.1479820627803, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788761, Length=222, Percent_Identity=29.7297297297297, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789593, Length=223, Percent_Identity=27.8026905829596, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789672, Length=222, Percent_Identity=25.2252252252252, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787792, Length=222, Percent_Identity=28.8288288288288, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789991, Length=217, Percent_Identity=26.7281105990783, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790467, Length=220, Percent_Identity=25.4545454545455, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790190, Length=204, Percent_Identity=26.4705882352941, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=26.9230769230769, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787029, Length=227, Percent_Identity=26.431718061674, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786253, Length=194, Percent_Identity=26.2886597938144, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082268, Length=218, Percent_Identity=26.1467889908257, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48995001, Length=202, Percent_Identity=26.7326732673267, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788210, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790739, Length=224, Percent_Identity=22.3214285714286, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=24.1860465116279, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789032, Length=252, Percent_Identity=22.6190476190476, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788897, Length=200, Percent_Identity=25, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=232, Percent_Identity=33.1896551724138, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI71983510, Length=232, Percent_Identity=33.1896551724138, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI71983516, Length=232, Percent_Identity=33.1896551724138, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI115533608, Length=234, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17510237, Length=225, Percent_Identity=30.6666666666667, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17565586, Length=241, Percent_Identity=26.5560165975104, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17539902, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=222, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17511077, Length=211, Percent_Identity=26.5402843601896, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24666092, Length=227, Percent_Identity=31.7180616740088, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI28573571, Length=231, Percent_Identity=29.4372294372294, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28573573, Length=231, Percent_Identity=29.4372294372294, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI221512771, Length=237, Percent_Identity=29.1139240506329, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24643674, Length=236, Percent_Identity=25.8474576271186, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI221500365, Length=223, Percent_Identity=26.457399103139, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI116007184, Length=223, Percent_Identity=26.457399103139, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24650853, Length=209, Percent_Identity=28.2296650717703, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28574150, Length=225, Percent_Identity=31.5555555555556, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24650855, Length=209, Percent_Identity=28.2296650717703, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007328, Length=225, Percent_Identity=31.5555555555556, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281362751, Length=209, Percent_Identity=28.2296650717703, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI85725262, Length=260, Percent_Identity=26.9230769230769, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI28574744, Length=229, Percent_Identity=24.8908296943231, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648314, Length=223, Percent_Identity=26.9058295964126, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582014, Length=204, Percent_Identity=27.4509803921569, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582012, Length=204, Percent_Identity=27.4509803921569, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45552437, Length=201, Percent_Identity=25.8706467661692, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24585557, Length=201, Percent_Identity=25.8706467661692, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI17136592, Length=204, Percent_Identity=27.4509803921569, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 32977; Mature: 32977

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEREEMKVITVRNLKKTYRNGVEAVKGIDLDIEPHEVCALLGPNGAGKTTTLKSILGFIN
CCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHC
YEGEIKVFGKPIDEVRDRISFVPAERSFYGYMTLSKAMKFCERFLPNFDSKKSLEMIKHF
CCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RLPMDKKIAGFSSGMKTGVYLSFTLAQEADLYILDEPTWGLDPIMRDDVLEMIREKVIQG
CCCCCHHHHHHCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
KSVLYTSHIISEVEKISDRIYIIDKGKIRYSGALDGLKEQFRIFYLPIEAMKKLDNRDFS
CHHHHHHHHHHHHHHHCCEEEEEECCCEEECHHHHHHHHCCEEEEEEHHHHHHCCCCCHH
SLRKVPNRIVVLSKDPEEWEELENLSEMEGTAPNLEEFFQFLIRGE
HHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MEREEMKVITVRNLKKTYRNGVEAVKGIDLDIEPHEVCALLGPNGAGKTTTLKSILGFIN
CCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHC
YEGEIKVFGKPIDEVRDRISFVPAERSFYGYMTLSKAMKFCERFLPNFDSKKSLEMIKHF
CCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
RLPMDKKIAGFSSGMKTGVYLSFTLAQEADLYILDEPTWGLDPIMRDDVLEMIREKVIQG
CCCCCHHHHHHCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
KSVLYTSHIISEVEKISDRIYIIDKGKIRYSGALDGLKEQFRIFYLPIEAMKKLDNRDFS
CHHHHHHHHHHHHHHHCCEEEEEECCCEEECHHHHHHHHCCEEEEEEHHHHHHCCCCCHH
SLRKVPNRIVVLSKDPEEWEELENLSEMEGTAPNLEEFFQFLIRGE
HHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]