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The map label for this gene is ytrA [H]

Identifier: 239616562

GI number: 239616562

Start: 171388

End: 171762

Strand: Reverse

Name: ytrA [H]

Synonym: Kole_0154

Alternate gene names: 239616562

Gene position: 171762-171388 (Counterclockwise)

Preceding gene: 239616563

Following gene: 239616561

Centisome position: 7.46

GC content: 42.13

Gene sequence:

>375_bases
GTGTGGTTTAACGTGGATCTAAGATCAAGAACACCTATATACGAACAGATTAAAAGAGGAATCAGGGAAGCCATTCTCCG
GGGAAAGCTAAATGAAGGGGATACATTGCCTTCAATTCGGGATATGGCTTCGAGTATAAGGGTGAACCCAAATACAGTGG
CAAGAGCCTACAGGGAACTTGAGATGGAAGGCATTGTTATGGCACATCAGGGAGTAGGCTATATAGTGATAAAGGACAAG
GAAGGTATTAAAGAGTTTATGCTTGAAGACCTTAAAAAAGATTTTCGGGAGATTGTTTCTAAGTCCAGGAGAGCCGGCTT
TTCTCTGGACGAGATTGTGGAGGTGATTAGTAAGATATGGAACGAGAAGAAATGA

Upstream 100 bases:

>100_bases
TGGTGGTACACTTTATCCCTTGCTGTTTTAACGCTGGTTATTGCTTTTCAGAGTTACAGGATATTCAAAACCAAGGAATT
TTAAAACGTGGTGATATAAA

Downstream 100 bases:

>100_bases
AAGTGATAACCGTCCGGAATCTGAAAAAGACCTATAGAAATGGCGTTGAAGCTGTAAAAGGGATAGATCTCGACATAGAG
CCTCACGAGGTTTGCGCTTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MWFNVDLRSRTPIYEQIKRGIREAILRGKLNEGDTLPSIRDMASSIRVNPNTVARAYRELEMEGIVMAHQGVGYIVIKDK
EGIKEFMLEDLKKDFREIVSKSRRAGFSLDEIVEVISKIWNEKK

Sequences:

>Translated_124_residues
MWFNVDLRSRTPIYEQIKRGIREAILRGKLNEGDTLPSIRDMASSIRVNPNTVARAYRELEMEGIVMAHQGVGYIVIKDK
EGIKEFMLEDLKKDFREIVSKSRRAGFSLDEIVEVISKIWNEKK
>Mature_124_residues
MWFNVDLRSRTPIYEQIKRGIREAILRGKLNEGDTLPSIRDMASSIRVNPNTVARAYRELEMEGIVMAHQGVGYIVIKDK
EGIKEFMLEDLKKDFREIVSKSRRAGFSLDEIVEVISKIWNEKK

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14413; Mature: 14413

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFNVDLRSRTPIYEQIKRGIREAILRGKLNEGDTLPSIRDMASSIRVNPNTVARAYREL
CEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
EMEGIVMAHQGVGYIVIKDKEGIKEFMLEDLKKDFREIVSKSRRAGFSLDEIVEVISKIW
HHHHHEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
NEKK
CCCC
>Mature Secondary Structure
MWFNVDLRSRTPIYEQIKRGIREAILRGKLNEGDTLPSIRDMASSIRVNPNTVARAYREL
CEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
EMEGIVMAHQGVGYIVIKDKEGIKEFMLEDLKKDFREIVSKSRRAGFSLDEIVEVISKIW
HHHHHEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
NEKK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]