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The map label for this gene is amyD [H]

Identifier: 238926022

GI number: 238926022

Start: 3422432

End: 3423301

Strand: Reverse

Name: amyD [H]

Synonym: EUBREC_3680

Alternate gene names: 238926022

Gene position: 3423301-3422432 (Counterclockwise)

Preceding gene: 238926024

Following gene: 238926021

Centisome position: 99.24

GC content: 37.59

Gene sequence:

>870_bases
ATGAGAAAAAGTAAATTACGGTTTTGGGGCTTTTTGGCACCGTCATTAATTGCATTTTGTATTGTTGTAATCATACCTAC
ATGTATTGGATTTTTCTATTCCCTTACAAACTGGAATGGAATTGTAGGCTCGGACATTAAGTTTGTAGGTTTTCAAAATT
TTATTGACATTTTTACGAGAGATGACTCATTTGTACATGCTTTTTTATTTACTGCGCTTTTTTCGGTGTGCGCAGTTGTA
TTGGTAAACCTTGTTGGCTTTGCTCTGGCGTTGTTAGTGACACAGAAATTTAGAGGCGCAACGCTGTTACGTGGAATTTT
CTTTATGCCAAATATGATAGGCGGATTATTGCTTGGATTTACTTGGCAGTTTATTTTTATATCGATTTTTGAAGCTTTTT
CAAAAAAGACAGGAATTGCAGCCTTTAGCGGATGGCTGTCGAATCCGGAAACCGGATTTATAGGATTGTTGATTTTGACT
GTGTGGCAGATGTCGGGATATATGATGATCGTATATATTGCGCAGATTCAGCAGATACCGGAATCGGTTAAGGAGGCAGC
AAGAATTGATGGAGCAAACTCATGGCAGCTCATGAGATATATCATCCTTCCGTTGATGATGCCTGCGTTTACAATCGGAT
TATTCTTATCTATTTCGAGTTCATTTAAAATGTTTGATCAAAATTTAGCTTTGACACAAGGTGGACCATACAAATCAACA
GAAATGATTGCGTTAAACATTTACAATTCTGCCTTTGGAGCAAATGAATTTGGTTTTGCACAGGCAAAGGCAATCGTTTT
TCTGATTATTGTGGCAGGAATCGGAGTTACGCAGTTGGTTATAACAAAGCGCAAGGAGGTTGAAATGTAA

Upstream 100 bases:

>100_bases
CAACTAGTAAGAGTTAAAGAGGGTTCCGGGATAGAGCTTCTATCCCGGAAATTCAAATAAGGGTAAAATCCTTTGTTTGG
AAAGGACGGATAGAAGAAGT

Downstream 100 bases:

>100_bases
TGAAGAAAAAAATCGCTTATGGAGTAACAGGACTTATTCTTGGATGCATTTTTTTGTTTCCGATTTATATTTTGATTATG
AATTCGTTCAAGACGACCAA

Product: sugar ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRKSKLRFWGFLAPSLIAFCIVVIIPTCIGFFYSLTNWNGIVGSDIKFVGFQNFIDIFTRDDSFVHAFLFTALFSVCAVV
LVNLVGFALALLVTQKFRGATLLRGIFFMPNMIGGLLLGFTWQFIFISIFEAFSKKTGIAAFSGWLSNPETGFIGLLILT
VWQMSGYMMIVYIAQIQQIPESVKEAARIDGANSWQLMRYIILPLMMPAFTIGLFLSISSSFKMFDQNLALTQGGPYKST
EMIALNIYNSAFGANEFGFAQAKAIVFLIIVAGIGVTQLVITKRKEVEM

Sequences:

>Translated_289_residues
MRKSKLRFWGFLAPSLIAFCIVVIIPTCIGFFYSLTNWNGIVGSDIKFVGFQNFIDIFTRDDSFVHAFLFTALFSVCAVV
LVNLVGFALALLVTQKFRGATLLRGIFFMPNMIGGLLLGFTWQFIFISIFEAFSKKTGIAAFSGWLSNPETGFIGLLILT
VWQMSGYMMIVYIAQIQQIPESVKEAARIDGANSWQLMRYIILPLMMPAFTIGLFLSISSSFKMFDQNLALTQGGPYKST
EMIALNIYNSAFGANEFGFAQAKAIVFLIIVAGIGVTQLVITKRKEVEM
>Mature_289_residues
MRKSKLRFWGFLAPSLIAFCIVVIIPTCIGFFYSLTNWNGIVGSDIKFVGFQNFIDIFTRDDSFVHAFLFTALFSVCAVV
LVNLVGFALALLVTQKFRGATLLRGIFFMPNMIGGLLLGFTWQFIFISIFEAFSKKTGIAAFSGWLSNPETGFIGLLILT
VWQMSGYMMIVYIAQIQQIPESVKEAARIDGANSWQLMRYIILPLMMPAFTIGLFLSISSSFKMFDQNLALTQGGPYKST
EMIALNIYNSAFGANEFGFAQAKAIVFLIIVAGIGVTQLVITKRKEVEM

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=254, Percent_Identity=26.3779527559055, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790465, Length=287, Percent_Identity=29.9651567944251, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789861, Length=283, Percent_Identity=27.208480565371, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32185; Mature: 32185

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure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EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]