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The map label for this gene is amyC [H]

Identifier: 238926021

GI number: 238926021

Start: 3421617

End: 3422432

Strand: Reverse

Name: amyC [H]

Synonym: EUBREC_3679

Alternate gene names: 238926021

Gene position: 3422432-3421617 (Counterclockwise)

Preceding gene: 238926022

Following gene: 238926020

Centisome position: 99.21

GC content: 37.38

Gene sequence:

>816_bases
ATGAAGAAAAAAATCGCTTATGGAGTAACAGGACTTATTCTTGGATGCATTTTTTTGTTTCCGATTTATATTTTGATTAT
GAATTCGTTCAAGACGACCAAGGGGATTTTTACAGATGTGTTGGGATTTCCGGCGAAAGGAACATTCACACTTGAAAACT
ATAAGAATGCGTTTCAAGAACTGGATTACATAAGATCTTTTATGAATTCGCTGCTTATCACGGTAGTGACAGCGGTTCTG
GTGCTGTTGATATCGGCTATGGCGGCCTGGGTACTTGTACGTTATAAAACCAAAGCAAGTAAGATTATTTTTTTGATATT
TGCCGGTTCTATGTTGATTCCATTTCAGTGTGTCATGCTTCCATTGGTTGGATTTGCAAGCAAAATCGGTTTGCTGTCTC
GTGGTGGCTTGATCTTTATGTATATGGGCTTTCAAACAAGTATGGCAATCATAATGTTTCATGGGTTCATAAAAAATATT
CCGGAGGAATTGGAGGAAGCCGCTACAATTGACGGGTGTGGTTCAATACGTCTGTTTATTTCAATCGTGCTTCCTTTGAT
GAGAACGATTATAGTCACGGTTGCAGTTATTAATGTTATGGGAACATGGAATGACTTCTTATTGCCATCGCTGATTATTA
ATAAACAGGGCTTACAGACGTTGCCTTTAAAAACATATCTGTTCTTTGGACAATTTGCAAAACGTTGGGATTTGGCTTCT
GCCGGATTGGTTATGTGCATGGCTCCTATTATTATCTTTTATTTGTTTAGTCAAAAATACATTGTAAAAGGTATTACAGA
AGGGGCAATAAAGTAA

Upstream 100 bases:

>100_bases
TTGGTTTTGCACAGGCAAAGGCAATCGTTTTTCTGATTATTGTGGCAGGAATCGGAGTTACGCAGTTGGTTATAACAAAG
CGCAAGGAGGTTGAAATGTA

Downstream 100 bases:

>100_bases
GGTGAGGAATTTGTGAATGAAAAACAATTGGTGGAAAGAGTCCGTAGTGTATCAGATTTATCCGCAAAGTTTTATGGATA
GCAACGGAGATGGAATCGGA

Product: sugar ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MKKKIAYGVTGLILGCIFLFPIYILIMNSFKTTKGIFTDVLGFPAKGTFTLENYKNAFQELDYIRSFMNSLLITVVTAVL
VLLISAMAAWVLVRYKTKASKIIFLIFAGSMLIPFQCVMLPLVGFASKIGLLSRGGLIFMYMGFQTSMAIIMFHGFIKNI
PEELEEAATIDGCGSIRLFISIVLPLMRTIIVTVAVINVMGTWNDFLLPSLIINKQGLQTLPLKTYLFFGQFAKRWDLAS
AGLVMCMAPIIIFYLFSQKYIVKGITEGAIK

Sequences:

>Translated_271_residues
MKKKIAYGVTGLILGCIFLFPIYILIMNSFKTTKGIFTDVLGFPAKGTFTLENYKNAFQELDYIRSFMNSLLITVVTAVL
VLLISAMAAWVLVRYKTKASKIIFLIFAGSMLIPFQCVMLPLVGFASKIGLLSRGGLIFMYMGFQTSMAIIMFHGFIKNI
PEELEEAATIDGCGSIRLFISIVLPLMRTIIVTVAVINVMGTWNDFLLPSLIINKQGLQTLPLKTYLFFGQFAKRWDLAS
AGLVMCMAPIIIFYLFSQKYIVKGITEGAIK
>Mature_271_residues
MKKKIAYGVTGLILGCIFLFPIYILIMNSFKTTKGIFTDVLGFPAKGTFTLENYKNAFQELDYIRSFMNSLLITVVTAVL
VLLISAMAAWVLVRYKTKASKIIFLIFAGSMLIPFQCVMLPLVGFASKIGLLSRGGLIFMYMGFQTSMAIIMFHGFIKNI
PEELEEAATIDGCGSIRLFISIVLPLMRTIIVTVAVINVMGTWNDFLLPSLIINKQGLQTLPLKTYLFFGQFAKRWDLAS
AGLVMCMAPIIIFYLFSQKYIVKGITEGAIK

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=259, Percent_Identity=27.7992277992278, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789860, Length=272, Percent_Identity=25, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790464, Length=210, Percent_Identity=26.1904761904762, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30204; Mature: 30204

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKIAYGVTGLILGCIFLFPIYILIMNSFKTTKGIFTDVLGFPAKGTFTLENYKNAFQE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCEEHHHHHHHHHH
LDYIRSFMNSLLITVVTAVLVLLISAMAAWVLVRYKTKASKIIFLIFAGSMLIPFQCVML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHHHHH
PLVGFASKIGLLSRGGLIFMYMGFQTSMAIIMFHGFIKNIPEELEEAATIDGCGSIRLFI
HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SIVLPLMRTIIVTVAVINVMGTWNDFLLPSLIINKQGLQTLPLKTYLFFGQFAKRWDLAS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHH
AGLVMCMAPIIIFYLFSQKYIVKGITEGAIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKKIAYGVTGLILGCIFLFPIYILIMNSFKTTKGIFTDVLGFPAKGTFTLENYKNAFQE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCEEHHHHHHHHHH
LDYIRSFMNSLLITVVTAVLVLLISAMAAWVLVRYKTKASKIIFLIFAGSMLIPFQCVML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHHHHH
PLVGFASKIGLLSRGGLIFMYMGFQTSMAIIMFHGFIKNIPEELEEAATIDGCGSIRLFI
HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SIVLPLMRTIIVTVAVINVMGTWNDFLLPSLIINKQGLQTLPLKTYLFFGQFAKRWDLAS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHH
AGLVMCMAPIIIFYLFSQKYIVKGITEGAIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408; 1854207 [H]