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The map label for this gene is ycjP [C]

Identifier: 238925860

GI number: 238925860

Start: 3289225

End: 3290079

Strand: Reverse

Name: ycjP [C]

Synonym: EUBREC_3518

Alternate gene names: 238925860

Gene position: 3290079-3289225 (Counterclockwise)

Preceding gene: 238925861

Following gene: 238925859

Centisome position: 95.37

GC content: 40.0

Gene sequence:

>855_bases
ATGCAGGATACTAATAAATATAAAGTATATAAAGCCATTACTGCAGTAGGCAAATGGCTGTTATTTGCAATCGTTTCCTT
TTTGATCTTATTTCCGGTTCTGTGGATTTTCGTATCATCGATCACACCGCCAGGTGAATTGTTCAAGATGCCAATCGACT
ATATTCCGGATCACCCGACACTGGAAAGCTACAAATTCCTGATAGAGAACGTGGGACTTTTGGAAAAAATCGGAAACACA
GTTCTGATCGTAGGTGTCACAATTGTGGTAAGTACTGTTATTTGTGCCATGGCGGCATATGGATTTTCAAGATTCAGAAC
AAAGGGGATCAGCATTGCCTTCGCGTTCATTATTGCAACAATGTTGATTCCGGAAGTTGTAACAGCAAGACCGTTGTATG
ATTTCATGAGAGCAGTAGGACTGTATGACACTTATCCGGGTCTGATCATTCTTTATATCAGTGCAGTCATTCCATTTACT
GTATTGATCTTAAAGAACTTTGCATCAGAGATTCCGATTTCCCTGGAAGAAGCAGCAACCATCGACGGAGCGAATTTTGT
CCAGAGATTATTCAAAGTGGTCTTACCGCTGATGAAACCTGCAATCGCTACAGTTTGTATCATTAACTTTATCACCTGTT
TGAATAACTTCTTTACTCCATTGTATTACTCAAATAATATCCAGGTGCTGTCTGTTGCAATTGTACAGCTGCCACTGAGA
GATAACATGTATGGTGTTCCGTGGGATCTGGTAAGTGCCATGGGTTGGATCATCCTGTTACCGATTATTATTTTCGTAGC
AGTCTTTGAAAAACAGATTATGGATGGTATAATGGCAGGAGGAGTAAAAGCTTAA

Upstream 100 bases:

>100_bases
ATGCATCTACACTGGCAGTTATGTTGTTCATTGTAATGGCGGTCTTTAGCTTTATCAACATCAAATTCATGAGTAAACTG
GCAGATTAGGAGGTATTGAC

Downstream 100 bases:

>100_bases
TTGGTAATTGTTCATAGGAGTATTAACCTGTGAAACGAGTTCTTGTGAATGAAGTGAACAGTAATACAAAACCTGATATA
ATTTGCCAACCAGAAGGAGG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MQDTNKYKVYKAITAVGKWLLFAIVSFLILFPVLWIFVSSITPPGELFKMPIDYIPDHPTLESYKFLIENVGLLEKIGNT
VLIVGVTIVVSTVICAMAAYGFSRFRTKGISIAFAFIIATMLIPEVVTARPLYDFMRAVGLYDTYPGLIILYISAVIPFT
VLILKNFASEIPISLEEAATIDGANFVQRLFKVVLPLMKPAIATVCIINFITCLNNFFTPLYYSNNIQVLSVAIVQLPLR
DNMYGVPWDLVSAMGWIILLPIIIFVAVFEKQIMDGIMAGGVKA

Sequences:

>Translated_284_residues
MQDTNKYKVYKAITAVGKWLLFAIVSFLILFPVLWIFVSSITPPGELFKMPIDYIPDHPTLESYKFLIENVGLLEKIGNT
VLIVGVTIVVSTVICAMAAYGFSRFRTKGISIAFAFIIATMLIPEVVTARPLYDFMRAVGLYDTYPGLIILYISAVIPFT
VLILKNFASEIPISLEEAATIDGANFVQRLFKVVLPLMKPAIATVCIINFITCLNNFFTPLYYSNNIQVLSVAIVQLPLR
DNMYGVPWDLVSAMGWIILLPIIIFVAVFEKQIMDGIMAGGVKA
>Mature_284_residues
MQDTNKYKVYKAITAVGKWLLFAIVSFLILFPVLWIFVSSITPPGELFKMPIDYIPDHPTLESYKFLIENVGLLEKIGNT
VLIVGVTIVVSTVICAMAAYGFSRFRTKGISIAFAFIIATMLIPEVVTARPLYDFMRAVGLYDTYPGLIILYISAVIPFT
VLILKNFASEIPISLEEAATIDGANFVQRLFKVVLPLMKPAIATVCIINFITCLNNFFTPLYYSNNIQVLSVAIVQLPLR
DNMYGVPWDLVSAMGWIILLPIIIFVAVFEKQIMDGIMAGGVKA

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Ycjnop. Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=287, Percent_Identity=27.1777003484321, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790464, Length=214, Percent_Identity=28.5046728971963, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789860, Length=257, Percent_Identity=24.124513618677, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31581; Mature: 31581

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDTNKYKVYKAITAVGKWLLFAIVSFLILFPVLWIFVSSITPPGELFKMPIDYIPDHPT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCC
LESYKFLIENVGLLEKIGNTVLIVGVTIVVSTVICAMAAYGFSRFRTKGISIAFAFIIAT
HHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLIPEVVTARPLYDFMRAVGLYDTYPGLIILYISAVIPFTVLILKNFASEIPISLEEAAT
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHC
IDGANFVQRLFKVVLPLMKPAIATVCIINFITCLNNFFTPLYYSNNIQVLSVAIVQLPLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC
DNMYGVPWDLVSAMGWIILLPIIIFVAVFEKQIMDGIMAGGVKA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQDTNKYKVYKAITAVGKWLLFAIVSFLILFPVLWIFVSSITPPGELFKMPIDYIPDHPT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCC
LESYKFLIENVGLLEKIGNTVLIVGVTIVVSTVICAMAAYGFSRFRTKGISIAFAFIIAT
HHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLIPEVVTARPLYDFMRAVGLYDTYPGLIILYISAVIPFTVLILKNFASEIPISLEEAAT
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHC
IDGANFVQRLFKVVLPLMKPAIATVCIINFITCLNNFFTPLYYSNNIQVLSVAIVQLPLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC
DNMYGVPWDLVSAMGWIILLPIIIFVAVFEKQIMDGIMAGGVKA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]