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The map label for this gene is yvbU [H]

Identifier: 238925807

GI number: 238925807

Start: 3253329

End: 3254333

Strand: Reverse

Name: yvbU [H]

Synonym: EUBREC_3465

Alternate gene names: 238925807

Gene position: 3254333-3253329 (Counterclockwise)

Preceding gene: 238925808

Following gene: 238925806

Centisome position: 94.34

GC content: 39.5

Gene sequence:

>1005_bases
ATGTATCAGTATAGAATACAACAACTTTTAGTTTTTGAAACTGAGAAATCGGAAGTTGGAGGGATGATAATCAATCCTAT
TCTACTGAAAATATTATTCTTTCTCATAAAAGAGGTGTATATAAATATGGAATTAAGACTATTGCGCTATTTTCTGACGG
TGGCAAAAGAACAGAGCTTTACAAAAGCAGCAGAACAATTGCATATTACCCAGCCAACGCTATCCAGACAAATGGCGGCA
TTTGAAGAGGAGCTTGGAGTAACATTATTTATTCGAAGCGGGAAGAAAATTTCGCTTACTGAAGAGGGAATTTTATTAAA
AAGGCGTGCCCTGGAGATCCTTAATCTTGAGGAAAAAACACTTGAGGAACTGAAAGGAAAAGAAGATGTTGTAGAGGGAA
ATATAACCATTGGATGCGGTGAATTTGCAGCGGTGGAGACATTGGCGAAGATATGTAAAACATATAAAGAAAAATACCCG
CTGGTTCAGATTGTATTGCATACTGCAACAGCAGATGCAGTGTATGAGATGATGAACAAAGGACTTGTAGATATTGCATT
ATTCATGGAGCCGGTGGATACCGAAGGGCTGGATTATATCAGAATCACAGATTGCGATCACTGGTGTGTTGGAATGCGGC
CGGATGATCCACTGGCAGAAAAAGAGTTTATAAGAAAAGAAGATCTTATTGGAAAACCATTGATCCTGCCGGAAAGAGTA
AATGTTCAAAGTGAACTTGCCAATTGGTTTGGAAAAGACTTTTCGAAACTGCAGATTGCTTTTACAAGTAATCTCGGAAC
AAATGCAGGAGTCATGGCGGCAAATGGACTGGGCTATCCAATATCAATCGAAGGTGCTGCAAAGTATTGGCGAGAGGATA
TTCTTGTACAGCGAAGAATTTCTCCTGAAATCACGACCAGTACGGTGATTGCCTGGCGACGAAACATTCCATATTCTCTG
GCGGTCAGTAAAATGATAGAAGAAATAAATGCTTTTCAGGCATAG

Upstream 100 bases:

>100_bases
GGACAAAAATTTGATACAAGTATTCTTGATAATGTCACAAGAGAATCAGCGGAAGCAACACTTGTAAAAAATGGTAATAG
ACTAGTTCGTAATTCTATTG

Downstream 100 bases:

>100_bases
AATGGAATTCAATATAAGCATTAGACATAATAAAAATATCAGGTATAAAATAGATGTATAAGAGAAATTCAAATCTTATA
CATCTATTTTTATACAAAAA

Product: transcriptional regulator GltC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MYQYRIQQLLVFETEKSEVGGMIINPILLKILFFLIKEVYINMELRLLRYFLTVAKEQSFTKAAEQLHITQPTLSRQMAA
FEEELGVTLFIRSGKKISLTEEGILLKRRALEILNLEEKTLEELKGKEDVVEGNITIGCGEFAAVETLAKICKTYKEKYP
LVQIVLHTATADAVYEMMNKGLVDIALFMEPVDTEGLDYIRITDCDHWCVGMRPDDPLAEKEFIRKEDLIGKPLILPERV
NVQSELANWFGKDFSKLQIAFTSNLGTNAGVMAANGLGYPISIEGAAKYWREDILVQRRISPEITTSTVIAWRRNIPYSL
AVSKMIEEINAFQA

Sequences:

>Translated_334_residues
MYQYRIQQLLVFETEKSEVGGMIINPILLKILFFLIKEVYINMELRLLRYFLTVAKEQSFTKAAEQLHITQPTLSRQMAA
FEEELGVTLFIRSGKKISLTEEGILLKRRALEILNLEEKTLEELKGKEDVVEGNITIGCGEFAAVETLAKICKTYKEKYP
LVQIVLHTATADAVYEMMNKGLVDIALFMEPVDTEGLDYIRITDCDHWCVGMRPDDPLAEKEFIRKEDLIGKPLILPERV
NVQSELANWFGKDFSKLQIAFTSNLGTNAGVMAANGLGYPISIEGAAKYWREDILVQRRISPEITTSTVIAWRRNIPYSL
AVSKMIEEINAFQA
>Mature_334_residues
MYQYRIQQLLVFETEKSEVGGMIINPILLKILFFLIKEVYINMELRLLRYFLTVAKEQSFTKAAEQLHITQPTLSRQMAA
FEEELGVTLFIRSGKKISLTEEGILLKRRALEILNLEEKTLEELKGKEDVVEGNITIGCGEFAAVETLAKICKTYKEKYP
LVQIVLHTATADAVYEMMNKGLVDIALFMEPVDTEGLDYIRITDCDHWCVGMRPDDPLAEKEFIRKEDLIGKPLILPERV
NVQSELANWFGKDFSKLQIAFTSNLGTNAGVMAANGLGYPISIEGAAKYWREDILVQRRISPEITTSTVIAWRRNIPYSL
AVSKMIEEINAFQA

Specific function: Transcriptional Activator Of The Hca Operon For 3- Phenylpropionic Acid Catabolism. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788887, Length=279, Percent_Identity=30.1075268817204, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790399, Length=294, Percent_Identity=24.8299319727891, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787530, Length=289, Percent_Identity=26.643598615917, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI145693105, Length=247, Percent_Identity=26.3157894736842, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=158, Percent_Identity=30.379746835443, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1790208, Length=238, Percent_Identity=26.4705882352941, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=24.3150684931507, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788297, Length=176, Percent_Identity=28.4090909090909, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787879, Length=198, Percent_Identity=26.2626262626263, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786508, Length=172, Percent_Identity=29.0697674418605, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787806, Length=160, Percent_Identity=26.875, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789204, Length=260, Percent_Identity=23.0769230769231, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790783, Length=163, Percent_Identity=26.9938650306748, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788481, Length=245, Percent_Identity=28.9795918367347, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786202, Length=239, Percent_Identity=25.9414225941423, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790262, Length=194, Percent_Identity=24.7422680412371, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787601, Length=158, Percent_Identity=23.4177215189873, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=123, Percent_Identity=30.0813008130081, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1786401, Length=140, Percent_Identity=28.5714285714286, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37996; Mature: 37996

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQYRIQQLLVFETEKSEVGGMIINPILLKILFFLIKEVYINMELRLLRYFLTVAKEQSF
CCHHHEEHHHEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKAAEQLHITQPTLSRQMAAFEEELGVTLFIRSGKKISLTEEGILLKRRALEILNLEEKT
HHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCHHHHHHHHHHHCCCHHH
LEELKGKEDVVEGNITIGCGEFAAVETLAKICKTYKEKYPLVQIVLHTATADAVYEMMNK
HHHHCCCCCEEECCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHC
GLVDIALFMEPVDTEGLDYIRITDCDHWCVGMRPDDPLAEKEFIRKEDLIGKPLILPERV
CCEEEHEEECCCCCCCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
NVQSELANWFGKDFSKLQIAFTSNLGTNAGVMAANGLGYPISIEGAAKYWREDILVQRRI
CHHHHHHHHHCCCHHHEEEEEECCCCCCCCEEEECCCCCCEEECHHHHHHHHHHHHHHCC
SPEITTSTVIAWRRNIPYSLAVSKMIEEINAFQA
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYQYRIQQLLVFETEKSEVGGMIINPILLKILFFLIKEVYINMELRLLRYFLTVAKEQSF
CCHHHEEHHHEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TKAAEQLHITQPTLSRQMAAFEEELGVTLFIRSGKKISLTEEGILLKRRALEILNLEEKT
HHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCHHHHHHHHHHHCCCHHH
LEELKGKEDVVEGNITIGCGEFAAVETLAKICKTYKEKYPLVQIVLHTATADAVYEMMNK
HHHHCCCCCEEECCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHC
GLVDIALFMEPVDTEGLDYIRITDCDHWCVGMRPDDPLAEKEFIRKEDLIGKPLILPERV
CCEEEHEEECCCCCCCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
NVQSELANWFGKDFSKLQIAFTSNLGTNAGVMAANGLGYPISIEGAAKYWREDILVQRRI
CHHHHHHHHHCCCHHHEEEEEECCCCCCCCEEEECCCCCCEEECHHHHHHHHHHHHHHCC
SPEITTSTVIAWRRNIPYSLAVSKMIEEINAFQA
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]