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The map label for this gene is pdxS [H]

Identifier: 238925297

GI number: 238925297

Start: 2833671

End: 2834555

Strand: Direct

Name: pdxS [H]

Synonym: EUBREC_2951

Alternate gene names: 238925297

Gene position: 2833671-2834555 (Clockwise)

Preceding gene: 238925284

Following gene: 238925298

Centisome position: 82.14

GC content: 49.6

Gene sequence:

>885_bases
ATGAAAAATAATAAGAATACTCAATACGAACTCAACAAAGGACTCGCGCAGATGCTAAAGGGCGGTGTCATCATGGATGT
CACGACTCCGGAGCAGGCCAGGATTGCCGAGGCTGCCGGTGCATGTGCTGTCATGGCGCTTGAAAGAATCCCTGCTGATA
TCAGAGCCGCAGGCGGTGTTTCAAGAATGAGCGATCCTAAGATGATTAAGGGCATTCAGGAGGCTGTCAGCATCCCCGTC
ATGGCAAAGTGCCGTATCGGTCACTTCGTGGAGGCTCAGATACTTGAGGCTATCGAGATTGACTACATTGATGAATCTGA
GGTGCTTTCACCTGCTGATGATGTGTACCATATCAATAAGAGAGATTTCAAGGTGCCTTTCGTATGTGGTGCAAGAGATC
TCGGTGAGGCTCTCCGCCGTATCAACGAGGGAGCTTCCATGATCCGTACAAAGGGTGAGCCCGGTACCGGTGATATCGTG
CAGGCGGTCAGACATATGAGAAAGATGAATTCTGAGATTGCAAAACTAACTTCCATGCGTGAAGATGAGCTTTTCGAGGC
AGCTAAAAATCTTCAGGTGCCTTTCGAGCTGGTCAAATTCGTTCACGATAACGGCAAGCTCCCGGTTGTAAACTTTGCGG
CCGGTGGTGTGGCTACTCCGGCTGACGCGGCTCTTATGATGCAGCTCGGTGCTGAGGGTGTGTTCGTCGGTTCAGGTATC
TTCAAATCAGGCGATCCTGCCAAGAGAGCTGCCGCTATCGTAAAAGCTGTGACAAACTTTACTGATGCAAAGCTCATCGC
AGAGCTTTCTGAGGATCTCGGTGAGGCTATGGTCGGAATCAACGAGAGCGAGATTAAAATCATCATGGAAGAAAGAGGCA
AATAA

Upstream 100 bases:

>100_bases
CGTCATATAAATGATTAAAGGGGCAAAATACCTTTTGACCCTCATATCATATAAATTGATGCAAAAATACAAATGCAAAA
ACCAAAAGGAGATTTAACAA

Downstream 100 bases:

>100_bases
AATGAAATCAGGACTTAAGATTGGTGTTTTAGCCGTTCAGGGAGCGTTTATTGAGCACAAGCGCATGCTTGAGTCTCTTG
GGTGCGAATGTGTAGAGCTG

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKNNKNTQYELNKGLAQMLKGGVIMDVTTPEQARIAEAAGACAVMALERIPADIRAAGGVSRMSDPKMIKGIQEAVSIPV
MAKCRIGHFVEAQILEAIEIDYIDESEVLSPADDVYHINKRDFKVPFVCGARDLGEALRRINEGASMIRTKGEPGTGDIV
QAVRHMRKMNSEIAKLTSMREDELFEAAKNLQVPFELVKFVHDNGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGI
FKSGDPAKRAAAIVKAVTNFTDAKLIAELSEDLGEAMVGINESEIKIIMEERGK

Sequences:

>Translated_294_residues
MKNNKNTQYELNKGLAQMLKGGVIMDVTTPEQARIAEAAGACAVMALERIPADIRAAGGVSRMSDPKMIKGIQEAVSIPV
MAKCRIGHFVEAQILEAIEIDYIDESEVLSPADDVYHINKRDFKVPFVCGARDLGEALRRINEGASMIRTKGEPGTGDIV
QAVRHMRKMNSEIAKLTSMREDELFEAAKNLQVPFELVKFVHDNGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGI
FKSGDPAKRAAAIVKAVTNFTDAKLIAELSEDLGEAMVGINESEIKIIMEERGK
>Mature_294_residues
MKNNKNTQYELNKGLAQMLKGGVIMDVTTPEQARIAEAAGACAVMALERIPADIRAAGGVSRMSDPKMIKGIQEAVSIPV
MAKCRIGHFVEAQILEAIEIDYIDESEVLSPADDVYHINKRDFKVPFVCGARDLGEALRRINEGASMIRTKGEPGTGDIV
QAVRHMRKMNSEIAKLTSMREDELFEAAKNLQVPFELVKFVHDNGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGI
FKSGDPAKRAAAIVKAVTNFTDAKLIAELSEDLGEAMVGINESEIKIIMEERGK

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=274, Percent_Identity=66.4233576642336, Blast_Score=377, Evalue=1e-105,
Organism=Saccharomyces cerevisiae, GI6323996, Length=290, Percent_Identity=65.8620689655172, Blast_Score=375, Evalue=1e-105,
Organism=Saccharomyces cerevisiae, GI6321049, Length=290, Percent_Identity=65.8620689655172, Blast_Score=375, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31715; Mature: 31715

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNKNTQYELNKGLAQMLKGGVIMDVTTPEQARIAEAAGACAVMALERIPADIRAAGGV
CCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
SRMSDPKMIKGIQEAVSIPVMAKCRIGHFVEAQILEAIEIDYIDESEVLSPADDVYHINK
CCCCCCHHHHHHHHHHCCCCEEHHCCCHHHHHHHHHHHHHCCCCCHHCCCCCHHEEECCC
RDFKVPFVCGARDLGEALRRINEGASMIRTKGEPGTGDIVQAVRHMRKMNSEIAKLTSMR
CCEECCEEECCHHHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
EDELFEAAKNLQVPFELVKFVHDNGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGI
HHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCC
FKSGDPAKRAAAIVKAVTNFTDAKLIAELSEDLGEAMVGINESEIKIIMEERGK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCC
>Mature Secondary Structure
MKNNKNTQYELNKGLAQMLKGGVIMDVTTPEQARIAEAAGACAVMALERIPADIRAAGGV
CCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
SRMSDPKMIKGIQEAVSIPVMAKCRIGHFVEAQILEAIEIDYIDESEVLSPADDVYHINK
CCCCCCHHHHHHHHHHCCCCEEHHCCCHHHHHHHHHHHHHCCCCCHHCCCCCHHEEECCC
RDFKVPFVCGARDLGEALRRINEGASMIRTKGEPGTGDIVQAVRHMRKMNSEIAKLTSMR
CCEECCEEECCHHHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
EDELFEAAKNLQVPFELVKFVHDNGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGI
HHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCC
FKSGDPAKRAAAIVKAVTNFTDAKLIAELSEDLGEAMVGINESEIKIIMEERGK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA