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The map label for this gene is rpoZ

Identifier: 238924036

GI number: 238924036

Start: 1558675

End: 1558935

Strand: Direct

Name: rpoZ

Synonym: EUBREC_1674

Alternate gene names: 238924036

Gene position: 1558675-1558935 (Clockwise)

Preceding gene: 238924035

Following gene: 238924037

Centisome position: 45.18

GC content: 42.91

Gene sequence:

>261_bases
ATGATACATCCATCGTATGTAGAGTTAATGAAGGTAGTAAACAACAATGTAGAGATAGGTGAAGAGCCGGTAGTAAACAG
CCGTTATTCTATCGTTATTGCTGCAGCAAAGCGTGCACGTCAGATTATTGATGGTGCAGAACCACTTATCGCACACCCTA
AGTGCAATAAGCCATTATCTATTGCTGTAGAGGAGCTGTACACGGGAGCTGTCAGAATCGTCTCAGATGATGAGGATTTA
AACGAAGGCGAAGAGGCTTAA

Upstream 100 bases:

>100_bases
GACACAAAAAAGAATCAGGATTATCTGGTATCATCAAATATAGATTTTATAAATAAAATGAGAAAAGAGCTTTTAAGCTT
TTCGAAAGGAGATAAATAAT

Downstream 100 bases:

>100_bases
TCTAGGAGGGGAAAGGCTGTTTTGTCTTTCCCTTTAATTGTAAATACTTACATTTGAGAGGTACTATGAAATTATTATTT
ATTTCGCTTGGATGCGATAA

Product: hypothetical protein

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MIHPSYVELMKVVNNNVEIGEEPVVNSRYSIVIAAAKRARQIIDGAEPLIAHPKCNKPLSIAVEELYTGAVRIVSDDEDL
NEGEEA

Sequences:

>Translated_86_residues
MIHPSYVELMKVVNNNVEIGEEPVVNSRYSIVIAAAKRARQIIDGAEPLIAHPKCNKPLSIAVEELYTGAVRIVSDDEDL
NEGEEA
>Mature_86_residues
MIHPSYVELMKVVNNNVEIGEEPVVNSRYSIVIAAAKRARQIIDGAEPLIAHPKCNKPLSIAVEELYTGAVRIVSDDEDL
NEGEEA

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_EUBR3 (C4Z9X7)

Other databases:

- EMBL:   CP001107
- RefSeq:   YP_002937552.1
- GeneID:   7963629
- GenomeReviews:   CP001107_GR
- KEGG:   ere:EUBREC_1674
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 9444; Mature: 9444

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHPSYVELMKVVNNNVEIGEEPVVNSRYSIVIAAAKRARQIIDGAEPLIAHPKCNKPLS
CCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEECCCCCCCHH
IAVEELYTGAVRIVSDDEDLNEGEEA
HHHHHHHCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MIHPSYVELMKVVNNNVEIGEEPVVNSRYSIVIAAAKRARQIIDGAEPLIAHPKCNKPLS
CCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEECCCCCCCHH
IAVEELYTGAVRIVSDDEDLNEGEEA
HHHHHHHCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA