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The map label for this gene is ydcP [H]

Identifier: 238924021

GI number: 238924021

Start: 1543249

End: 1545399

Strand: Direct

Name: ydcP [H]

Synonym: EUBREC_1659

Alternate gene names: 238924021

Gene position: 1543249-1545399 (Clockwise)

Preceding gene: 238924020

Following gene: 238924022

Centisome position: 44.74

GC content: 42.31

Gene sequence:

>2151_bases
ATGAGCATCTATATGAGGAAATATATGAGAAATAAAGATTTTGAACTGCTTGCACCGGCAGGCAACCTTGAGATATTTAA
GGGCGTGATAGAAAGCGGCGCCGATGCTGTGTATGTGGGCGGAAGCATGTTTGGAGCCAGGGCATATGCCAATAATTTCA
CAGAGGAGGAGCTTTTAGAGGCAATTGATTTTGCGCATTTACGAGGAGTAAAGGTGTATCTGACGGTCAATACGCTGATT
AAAAACAGTGAGTTTTCAAAGCTCTACGACTACCTGCTTCCATACTACAAAAGAGGGCTTGATGCAGTGATAGTGCAGGA
TATTGGAGTGGTGAAGGCTATCCATGAGTATTTTCCGTCAATGGAGATACATACGAGTACACAGATGACTGTAACGGGAG
CAGACGGAGTGCGCTTTCTTTCGCAGTTTGGAGTGACGCGTGTGGTCATGGCAAGGGAGGTTTCTCTTGCAGAGATGAAG
CGCATACATGAGGAAACCGGCATGGAGCTTGAAGCCTTTGTGCACGGAGCATTATGCTATTCGTATTCGGGACAGTGCCT
TTTCAGCAGTATTTTAGGTGGTAGAAGCGGAAACAGAGGCCGCTGTGCACAGCCGTGCAGACTGCCGTATACCGTGGAGG
GCAAAAAGGATGAATACATTTTAAGCCTTAAGGATATGTGTGGTATAAAGGCTCTTGACAAGCTGCATGATGCAGGTGTT
TATTCGCTCAAGATTGAGGGACGTATGAAGCAGCTTGAGTATGCATGCGGAGTGGTAAAATACTACAGAAGCTATATCGA
CAGTATGAAGCCTGTTACCGATGCTGATTATGACAGGATAAAGGCACTTGGAAACCGCTGTGGTTTCACAGACGGGTATT
ATTTCGACCACAATGGCTCTGATATGGTGACTTATGTGAAGCCTAATTTCGTTTCAAATGCTGCAGAGCCTTCGCCTGAA
AAGAGAAAGCTTTCGATAGAGGGAGAGCTTGTTTTAAGAGAGGGGGAGCCCGGAAGCCTCACTGTAAAAAGAGGTGATGT
GACATACAAAGCTTCAATAGAACCTGTCAGTGCCGCACTTAAGGCACCGCTAGATAAAAAGGCCGCTATCGACAGGATAA
ACAAAACCGGTGATACAGACTTTGAGTTTTCACATATTAAAGCTCAAATCGGAGAAAACGTCTTTGTGCCGAACGGAGCA
CTAAACAAGCTGCGGCGTGATGCAATTTCAGGGCTTTGTGATAAGCTGTTGAAAAAGTATTACAGGGATGACGCACGATA
TGCTGATATATCAAGTATGTGTGAGCTCCCTGAACATGTCGTAAAAAGCGACGCAACACATGAAGATGGAGCTGTAAATG
CAAAGGATTACACCACCATATGCTCGTGTATGACACGCGCGCAGCTTGATACACTTATTAGCTATGAATGCTTTGATGTT
TTTTATCTGGATTTTGACATGTATGACAGGAAGACTCTGATACAGCAGTTTGCAGATGATGTGAAATGCCTTACAAAGCG
AAATAAAAAAGTGTATCTCATGCTGCCTACGATATTCAGGGCGGATTCATCGGATTATTTTGTATCTATCGCAAAAGAGC
TTGATAAGGTAAGCTTCGATGGCTTTGTTGTGAAAAATTACGAGGAGCTTTATCTGACAGAAAATCTTTTTACAGGGAAA
AAAGTTATTTTAGACCACAATATGTATACCTTTAATGATGTTTCAAAGAGTGCTTTTTTTGAGCACGGAGTAAGTGGTGA
CACAGTGCCGCTTGAACTTAATTCAAGGGAGATTATGCATAGAAACAATATAGGCTCGCAGATGATAGTCTATGGATATT
ATCCGCTTATGACCACCGCCAACTGTGTGCACAAAAACACAAAGGGCTGTGATAAAAAGCAAAAGCTTATATATTTAAAG
GACAGATACAATAAATCCTTTGCAGTTTGTAACAACTGTAAGGAGTGCTATAATACAATATATAATTCACTGCCTACCAT
GCTCACAAAGAACATAAGTAAGCTTAAGGAGGCAGGTATAAGAAGTTTTAGATACAGCTTTACAATCGAGACTCCAAAGC
AGATTAAGGCGGTTATGGATGATAAGGTAGCTGAATATACAAACGGACATTACAAAAGAGGAGTAGAATAA

Upstream 100 bases:

>100_bases
GCTTCTAAAGGGGCAAATGACAGTAGCGATAAATAGCAATAAAAGGGGAACAGTTATCGTACACTGTTCCCTATTTTATT
GCAGGTTTATATGATATCAA

Downstream 100 bases:

>100_bases
CATGGTACATCTGATAGTACAGCTTTCCAAGTATATTATGATAATACTTTTTCTCATATATACTTTTTTATGCTTTCATT
TATTCAAGTATCCCGACAAG

Product: peptidase, U32 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 716; Mature: 715

Protein sequence:

>716_residues
MSIYMRKYMRNKDFELLAPAGNLEIFKGVIESGADAVYVGGSMFGARAYANNFTEEELLEAIDFAHLRGVKVYLTVNTLI
KNSEFSKLYDYLLPYYKRGLDAVIVQDIGVVKAIHEYFPSMEIHTSTQMTVTGADGVRFLSQFGVTRVVMAREVSLAEMK
RIHEETGMELEAFVHGALCYSYSGQCLFSSILGGRSGNRGRCAQPCRLPYTVEGKKDEYILSLKDMCGIKALDKLHDAGV
YSLKIEGRMKQLEYACGVVKYYRSYIDSMKPVTDADYDRIKALGNRCGFTDGYYFDHNGSDMVTYVKPNFVSNAAEPSPE
KRKLSIEGELVLREGEPGSLTVKRGDVTYKASIEPVSAALKAPLDKKAAIDRINKTGDTDFEFSHIKAQIGENVFVPNGA
LNKLRRDAISGLCDKLLKKYYRDDARYADISSMCELPEHVVKSDATHEDGAVNAKDYTTICSCMTRAQLDTLISYECFDV
FYLDFDMYDRKTLIQQFADDVKCLTKRNKKVYLMLPTIFRADSSDYFVSIAKELDKVSFDGFVVKNYEELYLTENLFTGK
KVILDHNMYTFNDVSKSAFFEHGVSGDTVPLELNSREIMHRNNIGSQMIVYGYYPLMTTANCVHKNTKGCDKKQKLIYLK
DRYNKSFAVCNNCKECYNTIYNSLPTMLTKNISKLKEAGIRSFRYSFTIETPKQIKAVMDDKVAEYTNGHYKRGVE

Sequences:

>Translated_716_residues
MSIYMRKYMRNKDFELLAPAGNLEIFKGVIESGADAVYVGGSMFGARAYANNFTEEELLEAIDFAHLRGVKVYLTVNTLI
KNSEFSKLYDYLLPYYKRGLDAVIVQDIGVVKAIHEYFPSMEIHTSTQMTVTGADGVRFLSQFGVTRVVMAREVSLAEMK
RIHEETGMELEAFVHGALCYSYSGQCLFSSILGGRSGNRGRCAQPCRLPYTVEGKKDEYILSLKDMCGIKALDKLHDAGV
YSLKIEGRMKQLEYACGVVKYYRSYIDSMKPVTDADYDRIKALGNRCGFTDGYYFDHNGSDMVTYVKPNFVSNAAEPSPE
KRKLSIEGELVLREGEPGSLTVKRGDVTYKASIEPVSAALKAPLDKKAAIDRINKTGDTDFEFSHIKAQIGENVFVPNGA
LNKLRRDAISGLCDKLLKKYYRDDARYADISSMCELPEHVVKSDATHEDGAVNAKDYTTICSCMTRAQLDTLISYECFDV
FYLDFDMYDRKTLIQQFADDVKCLTKRNKKVYLMLPTIFRADSSDYFVSIAKELDKVSFDGFVVKNYEELYLTENLFTGK
KVILDHNMYTFNDVSKSAFFEHGVSGDTVPLELNSREIMHRNNIGSQMIVYGYYPLMTTANCVHKNTKGCDKKQKLIYLK
DRYNKSFAVCNNCKECYNTIYNSLPTMLTKNISKLKEAGIRSFRYSFTIETPKQIKAVMDDKVAEYTNGHYKRGVE
>Mature_715_residues
SIYMRKYMRNKDFELLAPAGNLEIFKGVIESGADAVYVGGSMFGARAYANNFTEEELLEAIDFAHLRGVKVYLTVNTLIK
NSEFSKLYDYLLPYYKRGLDAVIVQDIGVVKAIHEYFPSMEIHTSTQMTVTGADGVRFLSQFGVTRVVMAREVSLAEMKR
IHEETGMELEAFVHGALCYSYSGQCLFSSILGGRSGNRGRCAQPCRLPYTVEGKKDEYILSLKDMCGIKALDKLHDAGVY
SLKIEGRMKQLEYACGVVKYYRSYIDSMKPVTDADYDRIKALGNRCGFTDGYYFDHNGSDMVTYVKPNFVSNAAEPSPEK
RKLSIEGELVLREGEPGSLTVKRGDVTYKASIEPVSAALKAPLDKKAAIDRINKTGDTDFEFSHIKAQIGENVFVPNGAL
NKLRRDAISGLCDKLLKKYYRDDARYADISSMCELPEHVVKSDATHEDGAVNAKDYTTICSCMTRAQLDTLISYECFDVF
YLDFDMYDRKTLIQQFADDVKCLTKRNKKVYLMLPTIFRADSSDYFVSIAKELDKVSFDGFVVKNYEELYLTENLFTGKK
VILDHNMYTFNDVSKSAFFEHGVSGDTVPLELNSREIMHRNNIGSQMIVYGYYPLMTTANCVHKNTKGCDKKQKLIYLKD
RYNKSFAVCNNCKECYNTIYNSLPTMLTKNISKLKEAGIRSFRYSFTIETPKQIKAVMDDKVAEYTNGHYKRGVE

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=262, Percent_Identity=40.8396946564886, Blast_Score=213, Evalue=4e-56,
Organism=Escherichia coli, GI1788397, Length=347, Percent_Identity=33.4293948126801, Blast_Score=174, Evalue=2e-44,
Organism=Escherichia coli, GI1789548, Length=296, Percent_Identity=30.7432432432432, Blast_Score=136, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 81150; Mature: 81019

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYMRKYMRNKDFELLAPAGNLEIFKGVIESGADAVYVGGSMFGARAYANNFTEEELLE
CCHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCHHHHHH
AIDFAHLRGVKVYLTVNTLIKNSEFSKLYDYLLPYYKRGLDAVIVQDIGVVKAIHEYFPS
HHHHHHHCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCC
MEIHTSTQMTVTGADGVRFLSQFGVTRVVMAREVSLAEMKRIHEETGMELEAFVHGALCY
CEEECCCEEEEECCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
SYSGQCLFSSILGGRSGNRGRCAQPCRLPYTVEGKKDEYILSLKDMCGIKALDKLHDAGV
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCEEEEHHHHCCHHHHHHHHCCCE
YSLKIEGRMKQLEYACGVVKYYRSYIDSMKPVTDADYDRIKALGNRCGFTDGYYFDHNGS
EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCC
DMVTYVKPNFVSNAAEPSPEKRKLSIEGELVLREGEPGSLTVKRGDVTYKASIEPVSAAL
CEEEEECCCHHCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEECCEEEEECCCHHHHHH
KAPLDKKAAIDRINKTGDTDFEFSHIKAQIGENVFVPNGALNKLRRDAISGLCDKLLKKY
HCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
YRDDARYADISSMCELPEHVVKSDATHEDGAVNAKDYTTICSCMTRAQLDTLISYECFDV
HCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEE
FYLDFDMYDRKTLIQQFADDVKCLTKRNKKVYLMLPTIFRADSSDYFVSIAKELDKVSFD
EEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCHHHHHHHHHHHHCCCC
GFVVKNYEELYLTENLFTGKKVILDHNMYTFNDVSKSAFFEHGVSGDTVPLELNSREIMH
CEEEECHHHEEEECCCCCCCEEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCHHHHH
RNNIGSQMIVYGYYPLMTTANCVHKNTKGCDKKQKLIYLKDRYNKSFAVCNNCKECYNTI
HCCCCCEEEEEEEEHHHHHHHHHHCCCCCCCCHHCEEEEECCCCCCHHHHHHHHHHHHHH
YNSLPTMLTKNISKLKEAGIRSFRYSFTIETPKQIKAVMDDKVAEYTNGHYKRGVE
HHHHHHHHHHHHHHHHHHCHHHEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SIYMRKYMRNKDFELLAPAGNLEIFKGVIESGADAVYVGGSMFGARAYANNFTEEELLE
CHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCHHHHHH
AIDFAHLRGVKVYLTVNTLIKNSEFSKLYDYLLPYYKRGLDAVIVQDIGVVKAIHEYFPS
HHHHHHHCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCC
MEIHTSTQMTVTGADGVRFLSQFGVTRVVMAREVSLAEMKRIHEETGMELEAFVHGALCY
CEEECCCEEEEECCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
SYSGQCLFSSILGGRSGNRGRCAQPCRLPYTVEGKKDEYILSLKDMCGIKALDKLHDAGV
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCEEEEHHHHCCHHHHHHHHCCCE
YSLKIEGRMKQLEYACGVVKYYRSYIDSMKPVTDADYDRIKALGNRCGFTDGYYFDHNGS
EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCC
DMVTYVKPNFVSNAAEPSPEKRKLSIEGELVLREGEPGSLTVKRGDVTYKASIEPVSAAL
CEEEEECCCHHCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEECCEEEEECCCHHHHHH
KAPLDKKAAIDRINKTGDTDFEFSHIKAQIGENVFVPNGALNKLRRDAISGLCDKLLKKY
HCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
YRDDARYADISSMCELPEHVVKSDATHEDGAVNAKDYTTICSCMTRAQLDTLISYECFDV
HCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEE
FYLDFDMYDRKTLIQQFADDVKCLTKRNKKVYLMLPTIFRADSSDYFVSIAKELDKVSFD
EEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCHHHHHHHHHHHHCCCC
GFVVKNYEELYLTENLFTGKKVILDHNMYTFNDVSKSAFFEHGVSGDTVPLELNSREIMH
CEEEECHHHEEEECCCCCCCEEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCHHHHH
RNNIGSQMIVYGYYPLMTTANCVHKNTKGCDKKQKLIYLKDRYNKSFAVCNNCKECYNTI
HCCCCCEEEEEEEEHHHHHHHHHHCCCCCCCCHHCEEEEECCCCCCHHHHHHHHHHHHHH
YNSLPTMLTKNISKLKEAGIRSFRYSFTIETPKQIKAVMDDKVAEYTNGHYKRGVE
HHHHHHHHHHHHHHHHHHCHHHEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]