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The map label for this gene is rnfB [H]

Identifier: 238924008

GI number: 238924008

Start: 1533361

End: 1534152

Strand: Direct

Name: rnfB [H]

Synonym: EUBREC_1646

Alternate gene names: 238924008

Gene position: 1533361-1534152 (Clockwise)

Preceding gene: 238924007

Following gene: 238924010

Centisome position: 44.45

GC content: 47.6

Gene sequence:

>792_bases
ATGAATGTTACTGCGATTATTATTGCAGCTTTAGTTGTTGGAGCTGTCGGTATAATTCTTGGATTTTTCCTCGGTATTTC
AGGAGAAAAATTCAAAGTAGAGGTTGACCCGAGAGAGGAAGCAATACTTGAGGTGCTTCCGGGCAACAACTGTGGTGGCT
GTGGATATGCCGGATGCTCCGGACTTGCTGCCGCCATTGCAAAGGGAGAGGCACCGGTAGGACAGTGTCCTGTAGGTGGA
GACCCTGTTGCGGCAAAGGTCAGCGAGATTATGGGTGTAAAGGTTGAGGCCGGAGTAAAGAAGGTTGCATTTGTAAAGTG
CGCCGGCACCTGTGATAAAGCAAATACAGACTACGACTACACAGGAGTAGAGGATTGTGTTGCAATGTCATTTGTACCGG
GCGGCGGACCTAAGTCATGTAATTATGGTTGCCTTGGCTATGGAAGCTGTGTGAAGGCATGTCCTTTTGATTCAATCCAT
GTGGTTGACGGAGTTGCATGTGTCAATCCGCTTACATGCAAGGCCTGCGGCAAGTGCGTAGAGGCTTGTCCAAAGCACCT
CATCGAGCTTATTCCATATGACACAAAGCATGTTGTAAAGTGCAGCTCAAAGGATAAGGGCAAGGATGTCATGAAGGCAT
GCTCGGTTGGATGTATCGGCTGTCATCTGTGCGAGAAGAACTGTCCGTCAGATGCTGTCCATGTAGTAGACAATGTAGCT
TATATTGATCAGGAGAAATGTACAGGCTGCGGAATCTGCGCAGAGAAGTGTCCAAAGAAGATTATTCTGTAA

Upstream 100 bases:

>100_bases
CCAGGGAACAGCCATCGTGCTTCTTACAGCGTGTCTTATGGCTATTGCCTTTATGGGATTCTCAGGAATGGTTTCTGTAT
AGGATTGGAGGAAAAGTGAT

Downstream 100 bases:

>100_bases
TGAATAAAAGCTGTCACATATCATTATGATATGTGGCAGCTTTTTTATAAGCTTGCAGCTATTCTGTGCTTACGTTATAT
TCATCTGATGTAGTGATAAT

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MNVTAIIIAALVVGAVGIILGFFLGISGEKFKVEVDPREEAILEVLPGNNCGGCGYAGCSGLAAAIAKGEAPVGQCPVGG
DPVAAKVSEIMGVKVEAGVKKVAFVKCAGTCDKANTDYDYTGVEDCVAMSFVPGGGPKSCNYGCLGYGSCVKACPFDSIH
VVDGVACVNPLTCKACGKCVEACPKHLIELIPYDTKHVVKCSSKDKGKDVMKACSVGCIGCHLCEKNCPSDAVHVVDNVA
YIDQEKCTGCGICAEKCPKKIIL

Sequences:

>Translated_263_residues
MNVTAIIIAALVVGAVGIILGFFLGISGEKFKVEVDPREEAILEVLPGNNCGGCGYAGCSGLAAAIAKGEAPVGQCPVGG
DPVAAKVSEIMGVKVEAGVKKVAFVKCAGTCDKANTDYDYTGVEDCVAMSFVPGGGPKSCNYGCLGYGSCVKACPFDSIH
VVDGVACVNPLTCKACGKCVEACPKHLIELIPYDTKHVVKCSSKDKGKDVMKACSVGCIGCHLCEKNCPSDAVHVVDNVA
YIDQEKCTGCGICAEKCPKKIIL
>Mature_263_residues
MNVTAIIIAALVVGAVGIILGFFLGISGEKFKVEVDPREEAILEVLPGNNCGGCGYAGCSGLAAAIAKGEAPVGQCPVGG
DPVAAKVSEIMGVKVEAGVKKVAFVKCAGTCDKANTDYDYTGVEDCVAMSFVPGGGPKSCNYGCLGYGSCVKACPFDSIH
VVDGVACVNPLTCKACGKCVEACPKHLIELIPYDTKHVVKCSSKDKGKDVMKACSVGCIGCHLCEKNCPSDAVHVVDNVA
YIDQEKCTGCGICAEKCPKKIIL

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=194, Percent_Identity=29.3814432989691, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 27039; Mature: 27039

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
11.4 %Cys+Met (Translated Protein)
9.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
11.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTAIIIAALVVGAVGIILGFFLGISGEKFKVEVDPREEAILEVLPGNNCGGCGYAGCS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHEECCCCCCCCCCCHHHH
GLAAAIAKGEAPVGQCPVGGDPVAAKVSEIMGVKVEAGVKKVAFVKCAGTCDKANTDYDY
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCEEEEEEECCCCCCCCCCCCC
TGVEDCVAMSFVPGGGPKSCNYGCLGYGSCVKACPFDSIHVVDGVACVNPLTCKACGKCV
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCHHHCCCHHHHHHHHHH
EACPKHLIELIPYDTKHVVKCSSKDKGKDVMKACSVGCIGCHLCEKNCPSDAVHVVDNVA
HHHHHHHHHHCCCCCHHEEECCCCCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
YIDQEKCTGCGICAEKCPKKIIL
HHCCCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MNVTAIIIAALVVGAVGIILGFFLGISGEKFKVEVDPREEAILEVLPGNNCGGCGYAGCS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHEECCCCCCCCCCCHHHH
GLAAAIAKGEAPVGQCPVGGDPVAAKVSEIMGVKVEAGVKKVAFVKCAGTCDKANTDYDY
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCEEEEEEECCCCCCCCCCCCC
TGVEDCVAMSFVPGGGPKSCNYGCLGYGSCVKACPFDSIHVVDGVACVNPLTCKACGKCV
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCHHHCCCHHHHHHHHHH
EACPKHLIELIPYDTKHVVKCSSKDKGKDVMKACSVGCIGCHLCEKNCPSDAVHVVDNVA
HHHHHHHHHHCCCCCHHEEECCCCCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
YIDQEKCTGCGICAEKCPKKIIL
HHCCCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA