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The map label for this gene is rnfA [H]

Identifier: 238924007

GI number: 238924007

Start: 1532752

End: 1533342

Strand: Direct

Name: rnfA [H]

Synonym: EUBREC_1645

Alternate gene names: 238924007

Gene position: 1532752-1533342 (Clockwise)

Preceding gene: 238924006

Following gene: 238924008

Centisome position: 44.43

GC content: 41.29

Gene sequence:

>591_bases
ATGGGTACATTAGGTCATTTACTGCTCATTGCAGTAGCATATGCAATAGTTAACAACGTAGTACTTAGCCAGTTCCTTGG
TATCTGTCCTTTCCTCGGCGTATCAAAGAACACAAAAACTGCTGCCGGAATGGGTGGTGCGGTAATTTTCGTTATCACAA
TCGCCACATTCGTTACACAGCTTATTTACAATTTTATACTGTATCCGCTTAATCTGTCATATTTACAGACTATCGTGTTC
ATTCTTGTAATTGCAGCACTTGTTCAGTTTGTAGAGATGTTCTTAAAGAAACAGATGCCGCCTCTTTACAAGGCACTCGG
TGTGTATCTGCCTCTTATCACAACAAACTGTGCCGTACTCGGTGTAGCACTTAACAGTGTAACAAAGGGCTACAATATCT
TAGAGAGTGTTGTTTACGGCTTTGCCACAGCTTTTGGTTTCTTTATTGCCATTGTGCTTATGGCAGGTGTTCGTGAGAAG
ATTGAGTATAATGATATTCCAAAGCCTTTCCAGGGAACAGCCATCGTGCTTCTTACAGCGTGTCTTATGGCTATTGCCTT
TATGGGATTCTCAGGAATGGTTTCTGTATAG

Upstream 100 bases:

>100_bases
GCCTTTCAGGAGATTGTGCACATTGTGGAGCATCATGTCCATCAGCAAAAGCAGCACAGGCCGCTGTTGCGCCTAACACT
ACAGAAGGAGGGGATAAATA

Downstream 100 bases:

>100_bases
GATTGGAGGAAAAGTGATATGAATGTTACTGCGATTATTATTGCAGCTTTAGTTGTTGGAGCTGTCGGTATAATTCTTGG
ATTTTTCCTCGGTATTTCAG

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MGTLGHLLLIAVAYAIVNNVVLSQFLGICPFLGVSKNTKTAAGMGGAVIFVITIATFVTQLIYNFILYPLNLSYLQTIVF
ILVIAALVQFVEMFLKKQMPPLYKALGVYLPLITTNCAVLGVALNSVTKGYNILESVVYGFATAFGFFIAIVLMAGVREK
IEYNDIPKPFQGTAIVLLTACLMAIAFMGFSGMVSV

Sequences:

>Translated_196_residues
MGTLGHLLLIAVAYAIVNNVVLSQFLGICPFLGVSKNTKTAAGMGGAVIFVITIATFVTQLIYNFILYPLNLSYLQTIVF
ILVIAALVQFVEMFLKKQMPPLYKALGVYLPLITTNCAVLGVALNSVTKGYNILESVVYGFATAFGFFIAIVLMAGVREK
IEYNDIPKPFQGTAIVLLTACLMAIAFMGFSGMVSV
>Mature_195_residues
GTLGHLLLIAVAYAIVNNVVLSQFLGICPFLGVSKNTKTAAGMGGAVIFVITIATFVTQLIYNFILYPLNLSYLQTIVFI
LVIAALVQFVEMFLKKQMPPLYKALGVYLPLITTNCAVLGVALNSVTKGYNILESVVYGFATAFGFFIAIVLMAGVREKI
EYNDIPKPFQGTAIVLLTACLMAIAFMGFSGMVSV

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=189, Percent_Identity=56.0846560846561, Blast_Score=212, Evalue=1e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 21110; Mature: 20979

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTLGHLLLIAVAYAIVNNVVLSQFLGICPFLGVSKNTKTAAGMGGAVIFVITIATFVTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHH
LIYNFILYPLNLSYLQTIVFILVIAALVQFVEMFLKKQMPPLYKALGVYLPLITTNCAVL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GVALNSVTKGYNILESVVYGFATAFGFFIAIVLMAGVREKIEYNDIPKPFQGTAIVLLTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
CLMAIAFMGFSGMVSV
HHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GTLGHLLLIAVAYAIVNNVVLSQFLGICPFLGVSKNTKTAAGMGGAVIFVITIATFVTQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHH
LIYNFILYPLNLSYLQTIVFILVIAALVQFVEMFLKKQMPPLYKALGVYLPLITTNCAVL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GVALNSVTKGYNILESVVYGFATAFGFFIAIVLMAGVREKIEYNDIPKPFQGTAIVLLTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
CLMAIAFMGFSGMVSV
HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA