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The map label for this gene is araQ [H]

Identifier: 238923456

GI number: 238923456

Start: 981354

End: 982217

Strand: Direct

Name: araQ [H]

Synonym: EUBREC_1076

Alternate gene names: 238923456

Gene position: 981354-982217 (Clockwise)

Preceding gene: 238923455

Following gene: 238923457

Centisome position: 28.45

GC content: 40.86

Gene sequence:

>864_bases
ATGGCAGCAAATGTAAACAAAAAAAAGAAAGGTATGGGAATCCATGCCAGACGTGCATTAGCATATATCGTGCTTGTGAT
AATCTCTTTCTTCTGTCTGTTCTGGTTCTACGTAATGATAATAAATGCAACCAGATCAAACGGAGAGCTTCAGTCAGGAT
TTACGGCAATTCCGAGTACGCACCTGCTTGACAACTGGAATTCACTCTTACATGACACACTTCCGGTCATAAGAGGTATG
TTTAACAGCCTTTTTGTAGCAGCCTGCAGTGCAGTACTGTGTGTATATTTTTCGACAATGACAGCATATGCCATACATGC
ATATGAGTTCAAGGCAAAGAAATTCATTTCCACCTTTATACTTATGGTTATGATGATTCCTACACAGGTTACAGCTCTTG
GATTTGTTAAATTGGTAACAGGCATGGGACTGATGGATTCGTTTATTCCACTTATAGTTCCGACAATTGCTTCACCTGTC
ACATATTTTTACATGAAGCAGTATATGGAGAGCTCACTTCCATTGTCTCTGATTGAGGCAGCGAGAATTGACGGCTCCGG
AGAGTTTAGGACGTTTAATCATATCGTGCTTCCGCTGATGAAGCCGGCAATAGCAGTACAGGCAATTTTCTCCTTTGTAA
GCAGCTGGAACAATTACTTCACTCCGGCACTTATATTACACGAAAACAATAAGAAGACACTTCCAATCCTGTTAGCACAG
CTTAGAAGTGCAGACTTCTTGAAGTTTGATATGGGAAAGGTATACATGATGATTACATTCTCTATCCTTCCTGTAATAGT
GGTTTACCTTATTCTTTCAAAGCACATCGTAGGTGGTGTTGCCATGGGAAGTGTGAAGGGCTGA

Upstream 100 bases:

>100_bases
CGGTGCACTGTCAGTTATACTGTTTATCATCACAGCAATACTTAGTGTGGCGGTATTCAAGCTAAGCGGCAACGATGATA
AGAGAAAGGAGTAGGTCGAT

Downstream 100 bases:

>100_bases
TACAGACCATTGATTAAAACAATTTTCTCTTTATATTTTTTCCCTTCATCTAAAAAGGACCGCTCACCCGGGCGGTCCTT
TTTTACGAGCAAAATGGCAG

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MAANVNKKKKGMGIHARRALAYIVLVIISFFCLFWFYVMIINATRSNGELQSGFTAIPSTHLLDNWNSLLHDTLPVIRGM
FNSLFVAACSAVLCVYFSTMTAYAIHAYEFKAKKFISTFILMVMMIPTQVTALGFVKLVTGMGLMDSFIPLIVPTIASPV
TYFYMKQYMESSLPLSLIEAARIDGSGEFRTFNHIVLPLMKPAIAVQAIFSFVSSWNNYFTPALILHENNKKTLPILLAQ
LRSADFLKFDMGKVYMMITFSILPVIVVYLILSKHIVGGVAMGSVKG

Sequences:

>Translated_287_residues
MAANVNKKKKGMGIHARRALAYIVLVIISFFCLFWFYVMIINATRSNGELQSGFTAIPSTHLLDNWNSLLHDTLPVIRGM
FNSLFVAACSAVLCVYFSTMTAYAIHAYEFKAKKFISTFILMVMMIPTQVTALGFVKLVTGMGLMDSFIPLIVPTIASPV
TYFYMKQYMESSLPLSLIEAARIDGSGEFRTFNHIVLPLMKPAIAVQAIFSFVSSWNNYFTPALILHENNKKTLPILLAQ
LRSADFLKFDMGKVYMMITFSILPVIVVYLILSKHIVGGVAMGSVKG
>Mature_286_residues
AANVNKKKKGMGIHARRALAYIVLVIISFFCLFWFYVMIINATRSNGELQSGFTAIPSTHLLDNWNSLLHDTLPVIRGMF
NSLFVAACSAVLCVYFSTMTAYAIHAYEFKAKKFISTFILMVMMIPTQVTALGFVKLVTGMGLMDSFIPLIVPTIASPVT
YFYMKQYMESSLPLSLIEAARIDGSGEFRTFNHIVLPLMKPAIAVQAIFSFVSSWNNYFTPALILHENNKKTLPILLAQL
RSADFLKFDMGKVYMMITFSILPVIVVYLILSKHIVGGVAMGSVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=255, Percent_Identity=29.4117647058824, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790464, Length=273, Percent_Identity=27.4725274725275, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787571, Length=273, Percent_Identity=25.6410256410256, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787368, Length=155, Percent_Identity=29.0322580645161, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32003; Mature: 31872

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAANVNKKKKGMGIHARRALAYIVLVIISFFCLFWFYVMIINATRSNGELQSGFTAIPST
CCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCH
HLLDNWNSLLHDTLPVIRGMFNSLFVAACSAVLCVYFSTMTAYAIHAYEFKAKKFISTFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMVMMIPTQVTALGFVKLVTGMGLMDSFIPLIVPTIASPVTYFYMKQYMESSLPLSLIEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
ARIDGSGEFRTFNHIVLPLMKPAIAVQAIFSFVSSWNNYFTPALILHENNKKTLPILLAQ
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
LRSADFLKFDMGKVYMMITFSILPVIVVYLILSKHIVGGVAMGSVKG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AANVNKKKKGMGIHARRALAYIVLVIISFFCLFWFYVMIINATRSNGELQSGFTAIPST
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCH
HLLDNWNSLLHDTLPVIRGMFNSLFVAACSAVLCVYFSTMTAYAIHAYEFKAKKFISTFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMVMMIPTQVTALGFVKLVTGMGLMDSFIPLIVPTIASPVTYFYMKQYMESSLPLSLIEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
ARIDGSGEFRTFNHIVLPLMKPAIAVQAIFSFVSSWNNYFTPALILHENNKKTLPILLAQ
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
LRSADFLKFDMGKVYMMITFSILPVIVVYLILSKHIVGGVAMGSVKG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]