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The map label for this gene is ysdA [H]

Identifier: 238923393

GI number: 238923393

Start: 912519

End: 912851

Strand: Direct

Name: ysdA [H]

Synonym: EUBREC_1013

Alternate gene names: 238923393

Gene position: 912519-912851 (Clockwise)

Preceding gene: 238923392

Following gene: 238923394

Centisome position: 26.45

GC content: 40.84

Gene sequence:

>333_bases
ATGCAGATATGTTTATATATTTATAAATTTATGTGCGGAGTAATAGAATGGAGCATTATTTATATGAAAATTTTTCTGAT
TTATCTGCTTCTTATGAATATAGCAGGCTTTGCTGCTATGGGAATTGACAAGTGTAAGGCCATGGCACACGCATGGCGCA
TCCCGGAGAAGACATTATTTGGGCTCAGCCTGCTGGGCGGAAGCGCCGGTACCTGGGCTGGGATGTATGCCTTCAGGCAC
AAGACAAAGCATTGGTATTTTGTAAAGGGGATGCCGCTTATTTTCTTTATCCATGTGGTTATTGCATGTGTTATCTACAG
GAATTTCTATTAG

Upstream 100 bases:

>100_bases
CTGCACCGGCTAAGGTTTCTAAAAAAGCTAAGAATTAATAATTAATTTATGGCCCGGCCTTTAAAGGCTGGGCTATTGTT
TTTTGTGGACTTATTAATAT

Downstream 100 bases:

>100_bases
AAATTTAATTATACAAGGTAACAAAATACTTAATGTAGGTAAAAAGTAACAAAAAAATGTAGCATATAAGTACATAATTG
TGTATAATAGATAACAGGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MQICLYIYKFMCGVIEWSIIYMKIFLIYLLLMNIAGFAAMGIDKCKAMAHAWRIPEKTLFGLSLLGGSAGTWAGMYAFRH
KTKHWYFVKGMPLIFFIHVVIACVIYRNFY

Sequences:

>Translated_110_residues
MQICLYIYKFMCGVIEWSIIYMKIFLIYLLLMNIAGFAAMGIDKCKAMAHAWRIPEKTLFGLSLLGGSAGTWAGMYAFRH
KTKHWYFVKGMPLIFFIHVVIACVIYRNFY
>Mature_110_residues
MQICLYIYKFMCGVIEWSIIYMKIFLIYLLLMNIAGFAAMGIDKCKAMAHAWRIPEKTLFGLSLLGGSAGTWAGMYAFRH
KTKHWYFVKGMPLIFFIHVVIACVIYRNFY

Specific function: Unknown

COG id: COG3326

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010718 [H]

Pfam domain/function: PF06961 DUF1294 [H]

EC number: NA

Molecular weight: Translated: 12822; Mature: 12822

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
10.9 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
10.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQICLYIYKFMCGVIEWSIIYMKIFLIYLLLMNIAGFAAMGIDKCKAMAHAWRIPEKTLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
GLSLLGGSAGTWAGMYAFRHKTKHWYFVKGMPLIFFIHVVIACVIYRNFY
HHHHHCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQICLYIYKFMCGVIEWSIIYMKIFLIYLLLMNIAGFAAMGIDKCKAMAHAWRIPEKTLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
GLSLLGGSAGTWAGMYAFRHKTKHWYFVKGMPLIFFIHVVIACVIYRNFY
HHHHHCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]