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The map label for this gene is 238922728

Identifier: 238922728

GI number: 238922728

Start: 282081

End: 282641

Strand: Direct

Name: 238922728

Synonym: EUBREC_0303

Alternate gene names: NA

Gene position: 282081-282641 (Clockwise)

Preceding gene: 238922727

Following gene: 238922729

Centisome position: 8.18

GC content: 34.58

Gene sequence:

>561_bases
ATGGATGATAGCGCAATAGTTGAATTGTTTTGGAAGCGTGATGAACAGGCAATTGCTGCAACAACAGAAAAATATAATGT
ATATTGTTTATCAATTGCGATGAATATTTTGGGAAACATTGAGGATGCAGAGGAATGTGTGAATGATGCATATCTGAATA
CATGGAATTCTATTCCGCCAAACAAACCTAAAATGTTATCGACTTATCTTGGAAAGATAGTCAGAAATATGTCATTCAAT
TTGTATAAGAAAAACAGAGCTAAGAAGCGCACAAATGGAAGCTTCACGTTAATATTGGATGAATTATCTGAGATAATCAC
TGATTCGAAAAATATTGAAGATGAGGGCAATGCCAGGTTCCTGTTAGAGAACATTAATTCTTTTCTTAAGGAAATACCGG
CTGAGAAAAGACAAATTTTTGTGTGTCGTTACTGGTATTCTGACAGCGTCAGGGACATAGCAAAGAGATATGGCATGACT
GAAAACAATGTTTCAGTTACATTAAAGAGGATAAGAAAAAAATTACATGATTACCTTGTTGAAAGGGGCGTTGATTTATG
A

Upstream 100 bases:

>100_bases
ACATAATATACGTTATATACATTTTCTTATGAAAAAAATATCTACAGGTGTCAGAAATGGAATAAGAAATTGTGTATATA
AGTGAAAGGAGGAAGTGAGC

Downstream 100 bases:

>100_bases
ATGCAGAGAAGATATTTGATGTAATGGAAAACATAGACGAACAATATATTATAGAAGCTCATCAAAAAAATGTTATCAAA
AATAAAAAAAAGACAATTCG

Product: putative RNA polymerase sigma factor (ECF subfamily)

Products: NA

Alternate protein names: RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MDDSAIVELFWKRDEQAIAATTEKYNVYCLSIAMNILGNIEDAEECVNDAYLNTWNSIPPNKPKMLSTYLGKIVRNMSFN
LYKKNRAKKRTNGSFTLILDELSEIITDSKNIEDEGNARFLLENINSFLKEIPAEKRQIFVCRYWYSDSVRDIAKRYGMT
ENNVSVTLKRIRKKLHDYLVERGVDL

Sequences:

>Translated_186_residues
MDDSAIVELFWKRDEQAIAATTEKYNVYCLSIAMNILGNIEDAEECVNDAYLNTWNSIPPNKPKMLSTYLGKIVRNMSFN
LYKKNRAKKRTNGSFTLILDELSEIITDSKNIEDEGNARFLLENINSFLKEIPAEKRQIFVCRYWYSDSVRDIAKRYGMT
ENNVSVTLKRIRKKLHDYLVERGVDL
>Mature_186_residues
MDDSAIVELFWKRDEQAIAATTEKYNVYCLSIAMNILGNIEDAEECVNDAYLNTWNSIPPNKPKMLSTYLGKIVRNMSFN
LYKKNRAKKRTNGSFTLILDELSEIITDSKNIEDEGNARFLLENINSFLKEIPAEKRQIFVCRYWYSDSVRDIAKRYGMT
ENNVSVTLKRIRKKLHDYLVERGVDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21663; Mature: 21663

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDSAIVELFWKRDEQAIAATTEKYNVYCLSIAMNILGNIEDAEECVNDAYLNTWNSIPP
CCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
NKPKMLSTYLGKIVRNMSFNLYKKNRAKKRTNGSFTLILDELSEIITDSKNIEDEGNARF
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCCHHH
LLENINSFLKEIPAEKRQIFVCRYWYSDSVRDIAKRYGMTENNVSVTLKRIRKKLHDYLV
HHHHHHHHHHHCCCCHHEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
ERGVDL
HCCCCC
>Mature Secondary Structure
MDDSAIVELFWKRDEQAIAATTEKYNVYCLSIAMNILGNIEDAEECVNDAYLNTWNSIPP
CCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
NKPKMLSTYLGKIVRNMSFNLYKKNRAKKRTNGSFTLILDELSEIITDSKNIEDEGNARF
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCCHHH
LLENINSFLKEIPAEKRQIFVCRYWYSDSVRDIAKRYGMTENNVSVTLKRIRKKLHDYLV
HHHHHHHHHHHCCCCHHEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
ERGVDL
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA