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The map label for this gene is araQ [H]

Identifier: 238922292

GI number: 238922292

Start: 491537

End: 492439

Strand: Reverse

Name: araQ [H]

Synonym: EUBELI_20528

Alternate gene names: 238922292

Gene position: 492439-491537 (Counterclockwise)

Preceding gene: 238922293

Following gene: 238922290

Centisome position: 78.57

GC content: 37.54

Gene sequence:

>903_bases
ATGAGTAATTCAGGTAAAGCCTCTGCAAGTGCCGATATTAAAGGCACTAATGCTGGAGTGAAAGACAGGATAATACTTAC
AACGGAGAGAGTGTTATGTTATATCGTGCTTATTCTTATAACATTCTTGTGCCTTTTCTCGTTCTATGTACTTATTATTA
ATACAACAAGATCACACCCTGATATCCAGAAGGGATTCTCATTCCTTCCGGGAAAGTCATTTATAGTCAACATGAAGAAT
GTTCTTGCTAATGAGAATATTCCTGTTGTCAGAGGTATGTTTAACAGCTTGTTTGTTGCAGCATGTTCAGCGGTTCTGTC
AGTGTATTTCTCAGCACTTACAGCATTTGCTATTCATGCATATAACTTTAAGTTAAAGAAGTTTGCATTCACTTTCATTC
TTCTTGTAATGATGGTGCCAACACAGGTGTCAGCACTTGGATTTGTTAAGATGATGGGAGACTGGAATCTTCTCAATTCT
TACATACCACTTATTGTTCCTTCGGTCGCAGCGCCTGTTGTATTCTTCTTTATTAAGCAGTATATGGACAGTGTGCTTCC
AATGGAACTTATAGAGGCGGCAAGAATTGATGGCGCAAAAGAGTTCAGAATATTTAACCAGATTGTTCTGCCTCTTATGA
AGCCGGCATTGGCTGTTCAGATGATATTTACTTTCGTATCATCATGGAATAATTATTTTATACCTTCACTCCTTATTAAC
AAGGCAAGTAAGAAAACACTTCCTTTGTTGATAGCACAGCTTCGTAGTGCGGATTTCCTGAAGTTTGATATGGGTCAGGT
ATATATGATGATAGCATTTGCTATTGTTCCGGTAATTATAGTGTATATCTGTCTTTCAAAGTTCATTGTAAGAGGTGTTA
CACTTGGTGGTGTTAAAGGTTAG

Upstream 100 bases:

>100_bases
GCGGTACTTAGTATATTTGTATTTAATTATATAACAAAGGATATGGAAGCGGCAGGAATAAGAAAAGCTAAGAAGAAAAA
AGCAAAGGAGGCGAAGTAAT

Downstream 100 bases:

>100_bases
ATATGCTTTTAGATTAAAAAGAACCGTCCTGATTTCAGGGGCGGTTCTTTTTTGCGTCGTGCACTTTGGTAATGCAGTTT
CTGTTTAGAAAATGTATTCT

Product: multiple sugar transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSNSGKASASADIKGTNAGVKDRIILTTERVLCYIVLILITFLCLFSFYVLIINTTRSHPDIQKGFSFLPGKSFIVNMKN
VLANENIPVVRGMFNSLFVAACSAVLSVYFSALTAFAIHAYNFKLKKFAFTFILLVMMVPTQVSALGFVKMMGDWNLLNS
YIPLIVPSVAAPVVFFFIKQYMDSVLPMELIEAARIDGAKEFRIFNQIVLPLMKPALAVQMIFTFVSSWNNYFIPSLLIN
KASKKTLPLLIAQLRSADFLKFDMGQVYMMIAFAIVPVIIVYICLSKFIVRGVTLGGVKG

Sequences:

>Translated_300_residues
MSNSGKASASADIKGTNAGVKDRIILTTERVLCYIVLILITFLCLFSFYVLIINTTRSHPDIQKGFSFLPGKSFIVNMKN
VLANENIPVVRGMFNSLFVAACSAVLSVYFSALTAFAIHAYNFKLKKFAFTFILLVMMVPTQVSALGFVKMMGDWNLLNS
YIPLIVPSVAAPVVFFFIKQYMDSVLPMELIEAARIDGAKEFRIFNQIVLPLMKPALAVQMIFTFVSSWNNYFIPSLLIN
KASKKTLPLLIAQLRSADFLKFDMGQVYMMIAFAIVPVIIVYICLSKFIVRGVTLGGVKG
>Mature_299_residues
SNSGKASASADIKGTNAGVKDRIILTTERVLCYIVLILITFLCLFSFYVLIINTTRSHPDIQKGFSFLPGKSFIVNMKNV
LANENIPVVRGMFNSLFVAACSAVLSVYFSALTAFAIHAYNFKLKKFAFTFILLVMMVPTQVSALGFVKMMGDWNLLNSY
IPLIVPSVAAPVVFFFIKQYMDSVLPMELIEAARIDGAKEFRIFNQIVLPLMKPALAVQMIFTFVSSWNNYFIPSLLINK
ASKKTLPLLIAQLRSADFLKFDMGQVYMMIAFAIVPVIIVYICLSKFIVRGVTLGGVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=279, Percent_Identity=28.3154121863799, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787571, Length=287, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790464, Length=224, Percent_Identity=30.3571428571429, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787368, Length=187, Percent_Identity=29.9465240641711, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33358; Mature: 33226

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSGKASASADIKGTNAGVKDRIILTTERVLCYIVLILITFLCLFSFYVLIINTTRSHP
CCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DIQKGFSFLPGKSFIVNMKNVLANENIPVVRGMFNSLFVAACSAVLSVYFSALTAFAIHA
CHHHCCCCCCCCHHHEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YNFKLKKFAFTFILLVMMVPTQVSALGFVKMMGDWNLLNSYIPLIVPSVAAPVVFFFIKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YMDSVLPMELIEAARIDGAKEFRIFNQIVLPLMKPALAVQMIFTFVSSWNNYFIPSLLIN
HHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
KASKKTLPLLIAQLRSADFLKFDMGQVYMMIAFAIVPVIIVYICLSKFIVRGVTLGGVKG
HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SNSGKASASADIKGTNAGVKDRIILTTERVLCYIVLILITFLCLFSFYVLIINTTRSHP
CCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC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PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]