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The map label for this gene is rhaD [H]

Identifier: 238921987

GI number: 238921987

Start: 181860

End: 182675

Strand: Reverse

Name: rhaD [H]

Synonym: EUBELI_20222

Alternate gene names: 238921987

Gene position: 182675-181860 (Counterclockwise)

Preceding gene: 238921988

Following gene: 238921986

Centisome position: 29.15

GC content: 35.42

Gene sequence:

>816_bases
ATGAAAGATATATTAACAGCACCTTTTGTTAAAGAAATGTGTGATACTACAGCTAATATGTATCGTCTTGGCTGGGACGA
AAGAAATGGTGGTAATATCAGCTATATGCTTGATGAAGAAGAAGTTGCACAATATCTTGATATTAATCATGTGTTAAGAG
AGATTCCGACGGGTTTCAAAGCAGATGCACTTATTGGCAGAATATTTATAGTAACCGGTACAGGTAAGTACTTTAAAAAT
GTAAAGACAGATCCAGAGAATAATCTTGGAATAATAAGAATAGCTGAAGATGGAACAACAGCGCAGTTATTATGGGGATA
TAAGGATGGAGGAAAATTCACAAGCGAATTACCAGCGCATCTTATGAGTCATATGGCAAGACTTTCTGTTGATAAAGATA
ACAGAGTTGTTATACATTCACATCCAACTAATACACTTGCCATGAATTATGTTCATGAACTTGACGAGAAGAAATTTACG
CATACACTTTGGGAAATGTGTACTGAGTGTATAGTTGTGTTCCCGGATGGTGTAGGTATTCTCCCATGGATGCTTTGCGG
AACTAATGAAATAGGCGAGGCAACAGCAGAAAAAATGAAAGAATTCAGACTTGTTATATGGGCAATGCATGGAATATATG
GTGCTGGAAAAACTCTTGATGAGACATTTGGACTTATTGAAACTGTTGAAAAAGCTGCACAGATATATATGCTTACAGCT
GGACTTGAGAGAAAGAATACAATAAAAGACGAAGATATGATTAAGCTTGCAGAATTCTTTAAGGTGGATTATAGAAAAGA
TTTCCTTAATATATAA

Upstream 100 bases:

>100_bases
TTGGAGATATATGGCAGGAATATCTTAATAGAGAAAATGTGGCAGCTGATTATGTCAGTGAGGTTATGGATTACGAAAAG
AAAGTATTGGAGGCACGATA

Downstream 100 bases:

>100_bases
AGCGGTTTCATATAAGGACATATGCAGTGACGCAGGAAATTCCTGCGTCATTTTTAATGCGGAATAAAATTTAAAGTGAT
ATAATAAATAAATATTTACA

Product: rhamnulose-1-phosphate aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MKDILTAPFVKEMCDTTANMYRLGWDERNGGNISYMLDEEEVAQYLDINHVLREIPTGFKADALIGRIFIVTGTGKYFKN
VKTDPENNLGIIRIAEDGTTAQLLWGYKDGGKFTSELPAHLMSHMARLSVDKDNRVVIHSHPTNTLAMNYVHELDEKKFT
HTLWEMCTECIVVFPDGVGILPWMLCGTNEIGEATAEKMKEFRLVIWAMHGIYGAGKTLDETFGLIETVEKAAQIYMLTA
GLERKNTIKDEDMIKLAEFFKVDYRKDFLNI

Sequences:

>Translated_271_residues
MKDILTAPFVKEMCDTTANMYRLGWDERNGGNISYMLDEEEVAQYLDINHVLREIPTGFKADALIGRIFIVTGTGKYFKN
VKTDPENNLGIIRIAEDGTTAQLLWGYKDGGKFTSELPAHLMSHMARLSVDKDNRVVIHSHPTNTLAMNYVHELDEKKFT
HTLWEMCTECIVVFPDGVGILPWMLCGTNEIGEATAEKMKEFRLVIWAMHGIYGAGKTLDETFGLIETVEKAAQIYMLTA
GLERKNTIKDEDMIKLAEFFKVDYRKDFLNI
>Mature_271_residues
MKDILTAPFVKEMCDTTANMYRLGWDERNGGNISYMLDEEEVAQYLDINHVLREIPTGFKADALIGRIFIVTGTGKYFKN
VKTDPENNLGIIRIAEDGTTAQLLWGYKDGGKFTSELPAHLMSHMARLSVDKDNRVVIHSHPTNTLAMNYVHELDEKKFT
HTLWEMCTECIVVFPDGVGILPWMLCGTNEIGEATAEKMKEFRLVIWAMHGIYGAGKTLDETFGLIETVEKAAQIYMLTA
GLERKNTIKDEDMIKLAEFFKVDYRKDFLNI

Specific function: Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde [H]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. RhaD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790336, Length=265, Percent_Identity=47.5471698113208, Blast_Score=254, Evalue=6e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR013447 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =4.1.2.19 [H]

Molecular weight: Translated: 30830; Mature: 30830

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDILTAPFVKEMCDTTANMYRLGWDERNGGNISYMLDEEEVAQYLDINHVLREIPTGFK
CCCCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCC
ADALIGRIFIVTGTGKYFKNVKTDPENNLGIIRIAEDGTTAQLLWGYKDGGKFTSELPAH
CHHHEEEEEEEECCCHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHH
LMSHMARLSVDKDNRVVIHSHPTNTLAMNYVHELDEKKFTHTLWEMCTECIVVFPDGVGI
HHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCH
LPWMLCGTNEIGEATAEKMKEFRLVIWAMHGIYGAGKTLDETFGLIETVEKAAQIYMLTA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEEC
GLERKNTIKDEDMIKLAEFFKVDYRKDFLNI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDILTAPFVKEMCDTTANMYRLGWDERNGGNISYMLDEEEVAQYLDINHVLREIPTGFK
CCCCCCCHHHHHHHHHHHHHEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCC
ADALIGRIFIVTGTGKYFKNVKTDPENNLGIIRIAEDGTTAQLLWGYKDGGKFTSELPAH
CHHHEEEEEEEECCCHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHH
LMSHMARLSVDKDNRVVIHSHPTNTLAMNYVHELDEKKFTHTLWEMCTECIVVFPDGVGI
HHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCH
LPWMLCGTNEIGEATAEKMKEFRLVIWAMHGIYGAGKTLDETFGLIETVEKAAQIYMLTA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEEC
GLERKNTIKDEDMIKLAEFFKVDYRKDFLNI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]