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The map label for this gene is ydiP [H]

Identifier: 238921928

GI number: 238921928

Start: 126508

End: 127386

Strand: Reverse

Name: ydiP [H]

Synonym: EUBELI_20162

Alternate gene names: 238921928

Gene position: 127386-126508 (Counterclockwise)

Preceding gene: 238921930

Following gene: 238921926

Centisome position: 20.33

GC content: 39.48

Gene sequence:

>879_bases
ATGTATTTTGAATTAAAGGAAAACCGGCCACACGGCACACCGGAAAATCCGTTCAGTCAATATCATATCAGTGATGTAAA
GCGTGCATTCCAGATTCCGGTACACTGGCATGATGAGCTGGAAATTATATATGTAAAGCAGGGCAAGCTGCATGTGACCA
TATCAGGTGAAAACTATATAGGAAGCCCAAAGGATACATTTGTGGTATCTCCGGGCAGTCTGCATTTCATGGGCTCGCCG
ACAGGAGATGCAGATTATTACACATTTTTGTTTCCTCTTGAATATATATCATTTCAGACGGACGATCTCATGGAAAAATC
AATCCTATCCCCTCTCAAACGAGGCAGACTTATGATTAGTCCTCAGATAAATGATACAGCAGCAGATATATGCGAGCGGC
TGATAGAGATAAATGCACAGATATCAGGGAAAAACGCAGAAAACACAGATGCTGCAAATATAGAGGCGCAATTTGAAACC
AAAATAACTCTCATCAAATTCATCCAGAAAATGTGGAGCAATAATCTGATACTGGAAAATGGCACAAATGGCACCAACAC
AATAGAAAAAGAAATGATAACGTATATCCGGCAAAACTATACAAGGGAAATTTCACTGAAGGAATTTGGTGCACAGTTTC
ATTTGTCAGAAAAATACATATCACGCTACTTTAAAGAGCATTTTCATATTACTCTGTCGCAGTATATCAATCATCTCAGG
CTGGAGCATGCCAGACAGCTATTGGAGGAATCAGCAACATCCGTTACTGAGGTTGCAATGTGCAGTGGATATCAGAATGT
GAGCTACTTTATACGCAGCTTTAAGAAAATGTATGGGGTATCACCTCTTAAATACAGAAAAGCTTCCTGTATAATTTAA

Upstream 100 bases:

>100_bases
TTATGCATGTAATATGTTAAAATAAAAAATAATTGATATGTAATTATTACAGTAAACAAACCGGATGGGGATTAAAAGAG
ACTAAGGAATATGTAGAAAA

Downstream 100 bases:

>100_bases
ACATAGGTCAAGAGATTAAAGAAAAAATCCGCAATTTAGCGGATTTTTTTAATACATTCATTAAATAAAAGCAATCTGTT
ATCCTTATCAGCAGATATTT

Product: two-component system, response regulator YesN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MYFELKENRPHGTPENPFSQYHISDVKRAFQIPVHWHDELEIIYVKQGKLHVTISGENYIGSPKDTFVVSPGSLHFMGSP
TGDADYYTFLFPLEYISFQTDDLMEKSILSPLKRGRLMISPQINDTAADICERLIEINAQISGKNAENTDAANIEAQFET
KITLIKFIQKMWSNNLILENGTNGTNTIEKEMITYIRQNYTREISLKEFGAQFHLSEKYISRYFKEHFHITLSQYINHLR
LEHARQLLEESATSVTEVAMCSGYQNVSYFIRSFKKMYGVSPLKYRKASCII

Sequences:

>Translated_292_residues
MYFELKENRPHGTPENPFSQYHISDVKRAFQIPVHWHDELEIIYVKQGKLHVTISGENYIGSPKDTFVVSPGSLHFMGSP
TGDADYYTFLFPLEYISFQTDDLMEKSILSPLKRGRLMISPQINDTAADICERLIEINAQISGKNAENTDAANIEAQFET
KITLIKFIQKMWSNNLILENGTNGTNTIEKEMITYIRQNYTREISLKEFGAQFHLSEKYISRYFKEHFHITLSQYINHLR
LEHARQLLEESATSVTEVAMCSGYQNVSYFIRSFKKMYGVSPLKYRKASCII
>Mature_292_residues
MYFELKENRPHGTPENPFSQYHISDVKRAFQIPVHWHDELEIIYVKQGKLHVTISGENYIGSPKDTFVVSPGSLHFMGSP
TGDADYYTFLFPLEYISFQTDDLMEKSILSPLKRGRLMISPQINDTAADICERLIEINAQISGKNAENTDAANIEAQFET
KITLIKFIQKMWSNNLILENGTNGTNTIEKEMITYIRQNYTREISLKEFGAQFHLSEKYISRYFKEHFHITLSQYINHLR
LEHARQLLEESATSVTEVAMCSGYQNVSYFIRSFKKMYGVSPLKYRKASCII

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787987, Length=254, Percent_Identity=24.8031496062992, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790559, Length=138, Percent_Identity=26.0869565217391, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790391, Length=93, Percent_Identity=35.4838709677419, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33809; Mature: 33809

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFELKENRPHGTPENPFSQYHISDVKRAFQIPVHWHDELEIIYVKQGKLHVTISGENYI
CEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCEEEEEEECCEEEEEECCCCCC
GSPKDTFVVSPGSLHFMGSPTGDADYYTFLFPLEYISFQTDDLMEKSILSPLKRGRLMIS
CCCCCEEEECCCCEEEECCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHCCEEEEC
PQINDTAADICERLIEINAQISGKNAENTDAANIEAQFETKITLIKFIQKMWSNNLILEN
CCCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEC
GTNGTNTIEKEMITYIRQNYTREISLKEFGAQFHLSEKYISRYFKEHFHITLSQYINHLR
CCCCCHHHHHHHHHHHHHCCCCEEEHHHHCCCEEECHHHHHHHHHHHHEEEHHHHHHHHH
LEHARQLLEESATSVTEVAMCSGYQNVSYFIRSFKKMYGVSPLKYRKASCII
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHCCCCCCCC
>Mature Secondary Structure
MYFELKENRPHGTPENPFSQYHISDVKRAFQIPVHWHDELEIIYVKQGKLHVTISGENYI
CEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCEEEEEEECCEEEEEECCCCCC
GSPKDTFVVSPGSLHFMGSPTGDADYYTFLFPLEYISFQTDDLMEKSILSPLKRGRLMIS
CCCCCEEEECCCCEEEECCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHCCEEEEC
PQINDTAADICERLIEINAQISGKNAENTDAANIEAQFETKITLIKFIQKMWSNNLILEN
CCCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEC
GTNGTNTIEKEMITYIRQNYTREISLKEFGAQFHLSEKYISRYFKEHFHITLSQYINHLR
CCCCCHHHHHHHHHHHHHCCCCEEEHHHHCCCEEECHHHHHHHHHHHHEEEHHHHHHHHH
LEHARQLLEESATSVTEVAMCSGYQNVSYFIRSFKKMYGVSPLKYRKASCII
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]