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The map label for this gene is ydaL [H]

Identifier: 238921762

GI number: 238921762

Start: 3807208

End: 3807783

Strand: Direct

Name: ydaL [H]

Synonym: NT01EI_3931

Alternate gene names: 238921762

Gene position: 3807208-3807783 (Clockwise)

Preceding gene: 238921761

Following gene: NA

Centisome position: 99.87

GC content: 63.54

Gene sequence:

>576_bases
ATGGATAGCCATCAGCTGTTTTGTCAGGAGATGGCCGGCGTGAAGCCGCTGGTCCCGGATCGCCGCGTGTCGACGGCGCG
CGCCACGCCACCCAGTGAGGCGCAGTTGGCCCGGCGGGCGGCTGCGCAGCGGACCTTGGATGTGTCTTTGGACTCGCTCT
CGATGGCGTCGGTCGAGATGCTACGTCCGTGCGATCTGCTGGGATTTAAGCGTGAGGGGATCCAAGACGGGGTTTATCGT
AAGCTGCGGCTGGGTAAATATGCACTGCAGGCGGTTCTGGATCTGCACCGTCATACGCTGATCGAGGCGCGCACCGCGCT
GCTGCAGTTCGTGGCGGACTGCATCGCGCGCGACGTTCGTACCGCGCTGGTATTGCATGGCAAAGGGGAGCGCAGCCAGC
CTCAGGCGCTGCTGAAAAGCTATGTCAGCGCCTGGCTGCCGCAGATCCCTGACGTGATGGCGATACACAGCGCCGATAGG
CGCCACGGCGGCAGCGGCGCGCTCTATATCCTGCTGCGTAAGAGCGAGCGGCGTAAGGCGGATAACCGAGAGCGTCACCA
GAAACGACGGGGATAA

Upstream 100 bases:

>100_bases
TTACCCAGGCGGCACGCCAGGTATACCGTCATTGTCTCGGCGCGGTATGCGATAGTCCAGATACGGTGTCAGATGACTGA
GGTTGTACGAGGAGATAAGA

Downstream 100 bases:

>100_bases
CGCCGGGCGGGCCGGCGTTCGTTTCGGCCTAGCCTCACTTGCCGATGCAGAAGCTGGTGAAAATGCGCCCCAGCAGATCG
TCAGAGGTAAATTCGCCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MDSHQLFCQEMAGVKPLVPDRRVSTARATPPSEAQLARRAAAQRTLDVSLDSLSMASVEMLRPCDLLGFKREGIQDGVYR
KLRLGKYALQAVLDLHRHTLIEARTALLQFVADCIARDVRTALVLHGKGERSQPQALLKSYVSAWLPQIPDVMAIHSADR
RHGGSGALYILLRKSERRKADNRERHQKRRG

Sequences:

>Translated_191_residues
MDSHQLFCQEMAGVKPLVPDRRVSTARATPPSEAQLARRAAAQRTLDVSLDSLSMASVEMLRPCDLLGFKREGIQDGVYR
KLRLGKYALQAVLDLHRHTLIEARTALLQFVADCIARDVRTALVLHGKGERSQPQALLKSYVSAWLPQIPDVMAIHSADR
RHGGSGALYILLRKSERRKADNRERHQKRRG
>Mature_191_residues
MDSHQLFCQEMAGVKPLVPDRRVSTARATPPSEAQLARRAAAQRTLDVSLDSLSMASVEMLRPCDLLGFKREGIQDGVYR
KLRLGKYALQAVLDLHRHTLIEARTALLQFVADCIARDVRTALVLHGKGERSQPQALLKSYVSAWLPQIPDVMAIHSADR
RHGGSGALYILLRKSERRKADNRERHQKRRG

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=191, Percent_Identity=37.696335078534, Blast_Score=114, Evalue=3e-27,
Organism=Escherichia coli, GI1788671, Length=177, Percent_Identity=31.638418079096, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 21468; Mature: 21468

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSHQLFCQEMAGVKPLVPDRRVSTARATPPSEAQLARRAAAQRTLDVSLDSLSMASVEM
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LRPCDLLGFKREGIQDGVYRKLRLGKYALQAVLDLHRHTLIEARTALLQFVADCIARDVR
HCCHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALVLHGKGERSQPQALLKSYVSAWLPQIPDVMAIHSADRRHGGSGALYILLRKSERRKA
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCHHHCCCCCCEEEEEEECCHHHCC
DNRERHQKRRG
CHHHHHHHCCC
>Mature Secondary Structure
MDSHQLFCQEMAGVKPLVPDRRVSTARATPPSEAQLARRAAAQRTLDVSLDSLSMASVEM
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LRPCDLLGFKREGIQDGVYRKLRLGKYALQAVLDLHRHTLIEARTALLQFVADCIARDVR
HCCHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALVLHGKGERSQPQALLKSYVSAWLPQIPDVMAIHSADRRHGGSGALYILLRKSERRKA
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCHHHCCCCCCEEEEEEECCHHHCC
DNRERHQKRRG
CHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]