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The map label for this gene is rbsC [H]

Identifier: 238921725

GI number: 238921725

Start: 3770349

End: 3771329

Strand: Reverse

Name: rbsC [H]

Synonym: NT01EI_3894

Alternate gene names: 238921725

Gene position: 3771329-3770349 (Counterclockwise)

Preceding gene: 238921726

Following gene: 238921724

Centisome position: 98.92

GC content: 59.63

Gene sequence:

>981_bases
ATGAATACCCAAGTAACTGCAAACCAGGGCGGATTCAGCAAGGTCCGACTCAAAGTCTGGCTGGTCGAGCAGAAATCGCT
GATCGCCCTGCTGGTGCTGATCGCGGTGGTCTCCTCCATGAGCCCCAATTTCTTCACCGTCAATAATCTGTTCAACATTC
TGCAGCAGACCTCCGTGAACGCCATCATGGCCGTAGGGATGACGCTGGTGATCCTGACCTCCGGCATCGATCTGTCCGTA
GGATCGCTGCTGGCGCTGACCGGCGCGGTCGCGGCGTCCATTGTCGGGATGGATGTGAATGCGCTGGTGGCGGTTGGCGC
AGCGCTGGCGCTGGGGGCGGCGATTGGCGGCTGCACCGGCGTTATCGTGGCTAAGGGCAAGGTTCAGGCCTTTATTGCGA
CCCTGGTGATGATGCTGCTGCTGCGCGGGGTCACGATGGTGTATACCGACGGCAGTCCGGTCAATACCGGTTTCTCTGCG
CAGGCGGATCTGTTTGGCTGGTTTGGCATTGGTCGTCCTCTGGGGATGCCGACGCCTATCTGGCTGATGATTGTGGTCTT
TGCGCTGGCGTGGTACATGCTGCACCACACCCGCATGGGGCGTTATATTTACGCGCTGGGGGGGAATGAGGCGGCAACGC
GCCTGTCCGGGATCAGCGTCGATCGCGTCAAGATTGCGGTGTATGCCCTGTGCGGCTTGCTGTCGGCGTTGGCCGGTGTG
ATAGAGGTCGCCCGGCTCTCCTCAGCGCAGCCGACGGCCGGTACCGGCTATGAGCTGGATGCGATTGCGGCGGTGGTGCT
GGGCGGGACCAGTCTGGCCGGCGGTAAGGGGCGGATTATGGGAACGCTGATCGGCGCCCTGATCCTTGGCTTCCTGAATA
ACGGCCTAAACTTACTCGGTGTTTCCTCCTACTACCAAATGATCGTCAAGGCAGCGGTGATTCTGTTGGCGGTTTTGGTA
GACAACAAAAGCAATAAATAA

Upstream 100 bases:

>100_bases
GCGGCTGAGTGGCGAGTTCCCGATTGAACAGGCAACACAGGAAGTGCTGATGGCCGCGGCCGTTGGCAAGCAATACGGCG
TTAAGCAGGAGTAATCCCCG

Downstream 100 bases:

>100_bases
TCTTACCTACAGGAATCGATGAGATGAATATTACAAAACTGGCAACCTTGATCTCCGCCGTGGCCCTGAGCGCCATCCTG
AGTGCCAACGCCATGGCGCA

Product: ribose ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MNTQVTANQGGFSKVRLKVWLVEQKSLIALLVLIAVVSSMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSV
GSLLALTGAVAASIVGMDVNALVAVGAALALGAAIGGCTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFSA
QADLFGWFGIGRPLGMPTPIWLMIVVFALAWYMLHHTRMGRYIYALGGNEAATRLSGISVDRVKIAVYALCGLLSALAGV
IEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIMGTLIGALILGFLNNGLNLLGVSSYYQMIVKAAVILLAVLV
DNKSNK

Sequences:

>Translated_326_residues
MNTQVTANQGGFSKVRLKVWLVEQKSLIALLVLIAVVSSMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSV
GSLLALTGAVAASIVGMDVNALVAVGAALALGAAIGGCTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFSA
QADLFGWFGIGRPLGMPTPIWLMIVVFALAWYMLHHTRMGRYIYALGGNEAATRLSGISVDRVKIAVYALCGLLSALAGV
IEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIMGTLIGALILGFLNNGLNLLGVSSYYQMIVKAAVILLAVLV
DNKSNK
>Mature_326_residues
MNTQVTANQGGFSKVRLKVWLVEQKSLIALLVLIAVVSSMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSV
GSLLALTGAVAASIVGMDVNALVAVGAALALGAAIGGCTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFSA
QADLFGWFGIGRPLGMPTPIWLMIVVFALAWYMLHHTRMGRYIYALGGNEAATRLSGISVDRVKIAVYALCGLLSALAGV
IEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIMGTLIGALILGFLNNGLNLLGVSSYYQMIVKAAVILLAVLV
DNKSNK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=325, Percent_Identity=84.6153846153846, Blast_Score=512, Evalue=1e-146,
Organism=Escherichia coli, GI1790524, Length=331, Percent_Identity=36.8580060422961, Blast_Score=194, Evalue=8e-51,
Organism=Escherichia coli, GI1788896, Length=322, Percent_Identity=38.5093167701863, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI145693152, Length=309, Percent_Identity=35.9223300970874, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1789992, Length=380, Percent_Identity=35.7894736842105, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI87082395, Length=298, Percent_Identity=36.241610738255, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1788471, Length=328, Percent_Identity=36.280487804878, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI145693214, Length=269, Percent_Identity=37.9182156133829, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1787793, Length=287, Percent_Identity=35.191637630662, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787794, Length=302, Percent_Identity=29.8013245033113, Blast_Score=101, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33722; Mature: 33722

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTQVTANQGGFSKVRLKVWLVEQKSLIALLVLIAVVSSMSPNFFTVNNLFNILQQTSVN
CCCEEECCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
AIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGMDVNALVAVGAALALGAAIGGCTG
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCE
VIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFSAQADLFGWFGIGRPLGMPTPI
EEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCHH
WLMIVVFALAWYMLHHTRMGRYIYALGGNEAATRLSGISVDRVKIAVYALCGLLSALAGV
HHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
IEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIMGTLIGALILGFLNNGLNLLG
HHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
VSSYYQMIVKAAVILLAVLVDNKSNK
HHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNTQVTANQGGFSKVRLKVWLVEQKSLIALLVLIAVVSSMSPNFFTVNNLFNILQQTSVN
CCCEEECCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
AIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGMDVNALVAVGAALALGAAIGGCTG
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCE
VIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFSAQADLFGWFGIGRPLGMPTPI
EEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCHH
WLMIVVFALAWYMLHHTRMGRYIYALGGNEAATRLSGISVDRVKIAVYALCGLLSALAGV
HHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
IEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIMGTLIGALILGFLNNGLNLLG
HHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
VSSYYQMIVKAAVILLAVLVDNKSNK
HHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]