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The map label for this gene is ycfQ [C]

Identifier: 238921691

GI number: 238921691

Start: 3734506

End: 3735105

Strand: Reverse

Name: ycfQ [C]

Synonym: NT01EI_3852

Alternate gene names: 238921691

Gene position: 3735105-3734506 (Counterclockwise)

Preceding gene: 238921693

Following gene: 238921690

Centisome position: 97.97

GC content: 60.17

Gene sequence:

>600_bases
ATGGCAAGACCCCTCCAACACGATCGCGATGTGGCGTTGCAGCAGGCTGTCGCTCTGTTTTGGCGGCGCGGCTACTTTGC
GACGTCGATGAAAGAGATTGAGCAGGCGCTGAATATGCGCCCCGGAAGTATCTACGCCGCGTTTGGCAATAAAGCCGCAC
TGTTCTCCAGCGCGTTGACGCGCTATACCCAGAGCCAGGTGGATGCGTTTTTTGCTCTGATGGCGGACTATCCCGATCCG
TTTTCCGGTGCCGAGGCCTTTTTGCGCCACTTTGGCGCCACGTGTTCGACAGAGCTTCCCTCCAGCGTCTGTTTCTTGGT
TAAAAGCCTGCTGGAGCTAGAGGGGAGAGCGGAGGATGCGCCGCTGTCGGTGGTGCGGGAGAGCCTGGCGGCGATGGAGG
CAGCCTTTTACCGGGCTTTCCGGGAGGGTGTGTCGCCGTTAGTCGAGGCTGAGGCCCGACAAATGGCGCGCTGGCTGCAA
AAAGAGGTGATCGGTATTCGCATTATGGCGCTGCAGATTGGCAATTCCCCTGCGCTGGCGGCGCTGGTGGATGACAGCTG
CGTAACGCTGCGTCGCTGGCGCGCCAGCGTACTATCCTAA

Upstream 100 bases:

>100_bases
TCTAGATATTTTTGAGTGATTGTTCAATAATTTTTTTGAGCAACCGTTCAAAAAAGTGCGTTACAATGAACTGCATTGAA
CTCTCCAGCAGGCTTGTAGC

Downstream 100 bases:

>100_bases
TTTCCGGCGCCGACGGCGCCGCAGACATGGATCGCGGAACTGGTGTCTGGGCTGCGCAGGGGCCTGCCTGAGGCTTTCTC
ATCATCTCCTGAGGTTTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR-Family Transcriptional Regulator; HTH-Type Transcriptional Regulator; Transcriptional Regulator Of TetR Family Protein; Transcriptional Regulator TetR-Family; Transcriptional Regulator Tetr-Like Protein

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MARPLQHDRDVALQQAVALFWRRGYFATSMKEIEQALNMRPGSIYAAFGNKAALFSSALTRYTQSQVDAFFALMADYPDP
FSGAEAFLRHFGATCSTELPSSVCFLVKSLLELEGRAEDAPLSVVRESLAAMEAAFYRAFREGVSPLVEAEARQMARWLQ
KEVIGIRIMALQIGNSPALAALVDDSCVTLRRWRASVLS

Sequences:

>Translated_199_residues
MARPLQHDRDVALQQAVALFWRRGYFATSMKEIEQALNMRPGSIYAAFGNKAALFSSALTRYTQSQVDAFFALMADYPDP
FSGAEAFLRHFGATCSTELPSSVCFLVKSLLELEGRAEDAPLSVVRESLAAMEAAFYRAFREGVSPLVEAEARQMARWLQ
KEVIGIRIMALQIGNSPALAALVDDSCVTLRRWRASVLS
>Mature_198_residues
ARPLQHDRDVALQQAVALFWRRGYFATSMKEIEQALNMRPGSIYAAFGNKAALFSSALTRYTQSQVDAFFALMADYPDPF
SGAEAFLRHFGATCSTELPSSVCFLVKSLLELEGRAEDAPLSVVRESLAAMEAAFYRAFREGVSPLVEAEARQMARWLQK
EVIGIRIMALQIGNSPALAALVDDSCVTLRRWRASVLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081833, Length=204, Percent_Identity=28.4313725490196, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22033; Mature: 21901

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPLQHDRDVALQQAVALFWRRGYFATSMKEIEQALNMRPGSIYAAFGNKAALFSSALT
CCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
RYTQSQVDAFFALMADYPDPFSGAEAFLRHFGATCSTELPSSVCFLVKSLLELEGRAEDA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
PLSVVRESLAAMEAAFYRAFREGVSPLVEAEARQMARWLQKEVIGIRIMALQIGNSPALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHH
ALVDDSCVTLRRWRASVLS
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARPLQHDRDVALQQAVALFWRRGYFATSMKEIEQALNMRPGSIYAAFGNKAALFSSALT
CCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
RYTQSQVDAFFALMADYPDPFSGAEAFLRHFGATCSTELPSSVCFLVKSLLELEGRAEDA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
PLSVVRESLAAMEAAFYRAFREGVSPLVEAEARQMARWLQKEVIGIRIMALQIGNSPALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHH
ALVDDSCVTLRRWRASVLS
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA