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The map label for this gene is oxyR [H]

Identifier: 238921680

GI number: 238921680

Start: 3721207

End: 3722130

Strand: Reverse

Name: oxyR [H]

Synonym: NT01EI_3840

Alternate gene names: 238921680

Gene position: 3722130-3721207 (Counterclockwise)

Preceding gene: 238921683

Following gene: 238921677

Centisome position: 97.63

GC content: 58.12

Gene sequence:

>924_bases
ATGAATATTCGGGATTTAGAATATCTGGTGGCGTTGGCGGAGCACCGTCATTTCCGTCGGGCGGCGGATTCGTGCCATGT
CAGCCAGCCCACCCTTAGCGGGCAGATCCGCAAGCTGGAGGATGAGCTGGGGGTTATGCTATTGGAGCGTACCAGCCGTA
AGGTTCTGTTTACCCAGGCGGGCCTATTGCTCGTAGAGCAGGCGCGTACGGTGCTGCGTGAGGTGAAAGTACTCAAGGAG
ATGGCCAGCCAGCAGGGTGAGGCGATGTCCGGTCCGCTTCATATTGGTCTGATTCCTACCGTTGGCCCCTATCTGCTACC
GCAGATCATACCGATGTTGCATCAGGTATTTCCCAAGTTGGAGATGTATCTGCATGAAGCGCAGACCGCTCAGCTACTGG
CCCAGCTGGACAGCGGAAAGTTGGACTGCGCCATTCTGGCGTTGGTGAAGGAGACGGAGGCGTTCATTGAGATCCCTTTG
TTTGATGAGCCGATGACGCTGGCGGTGTATAGCGATCATCCCTGGGCGGAAAAAGAGCGTATCGCGATGCCGGAGCTGGC
GGGTGAGCATCTTTTAATGCTGGAAGATGGGCACTGCCTGCGCGATCAGGCGATGGGATTCTGTTTTGAGGCCGGCGCCG
ATGAAGATACCCACTTCCGGGCGACCAGCCTGGAGACCCTGCGCAATATGGTCGCGGCAGGCAGCGGGATTACGCTGTTG
CCTGATCTGGCCGTACCGTCTCAGCGCCAGCGCGACGGCGTCTGCTATCTGCCTTGTTATAAGCCGGAGCCTAGGCGAAC
CATTGCTCTGGTCTATCGTCCCGGTTCGCCGCTGCGCGCACGCTACGAGCAGCTCGCGGAGGCTATCCGCGAGCATATGC
AGCAGGTAATGATCCAGCGAGAGACGTTAAAACAGGCGGTTTAG

Upstream 100 bases:

>100_bases
CCGCTGTTTATTATTCATTATTGTTGCTCCTACTTGATAGTTCTAATCGTTAATTGCTATCTTATTCATCGATATTTACT
ATCGCTTGCGGGAGAAAAAC

Downstream 100 bases:

>100_bases
GCCGTTAAGCGCCGCCACGCGGTAGGCTTCTGCCATCGTGGGGTAGTTGAAGGTGGTATTGACGAAGTATTCGATGGTAT
TGCCCTCCCCCTTCTGCTCC

Product: DNA-binding transcriptional regulator OxyR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQAGLLLVEQARTVLREVKVLKE
MASQQGEAMSGPLHIGLIPTVGPYLLPQIIPMLHQVFPKLEMYLHEAQTAQLLAQLDSGKLDCAILALVKETEAFIEIPL
FDEPMTLAVYSDHPWAEKERIAMPELAGEHLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLL
PDLAVPSQRQRDGVCYLPCYKPEPRRTIALVYRPGSPLRARYEQLAEAIREHMQQVMIQRETLKQAV

Sequences:

>Translated_307_residues
MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQAGLLLVEQARTVLREVKVLKE
MASQQGEAMSGPLHIGLIPTVGPYLLPQIIPMLHQVFPKLEMYLHEAQTAQLLAQLDSGKLDCAILALVKETEAFIEIPL
FDEPMTLAVYSDHPWAEKERIAMPELAGEHLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLL
PDLAVPSQRQRDGVCYLPCYKPEPRRTIALVYRPGSPLRARYEQLAEAIREHMQQVMIQRETLKQAV
>Mature_307_residues
MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQAGLLLVEQARTVLREVKVLKE
MASQQGEAMSGPLHIGLIPTVGPYLLPQIIPMLHQVFPKLEMYLHEAQTAQLLAQLDSGKLDCAILALVKETEAFIEIPL
FDEPMTLAVYSDHPWAEKERIAMPELAGEHLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLL
PDLAVPSQRQRDGVCYLPCYKPEPRRTIALVYRPGSPLRARYEQLAEAIREHMQQVMIQRETLKQAV

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=307, Percent_Identity=87.2964169381108, Blast_Score=543, Evalue=1e-156,
Organism=Escherichia coli, GI157672245, Length=273, Percent_Identity=31.1355311355311, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI145693105, Length=284, Percent_Identity=27.8169014084507, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788887, Length=285, Percent_Identity=29.1228070175439, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787530, Length=248, Percent_Identity=27.8225806451613, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787879, Length=278, Percent_Identity=28.7769784172662, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788748, Length=300, Percent_Identity=25.6666666666667, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790208, Length=247, Percent_Identity=28.3400809716599, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788297, Length=259, Percent_Identity=29.7297297297297, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI2367136, Length=267, Percent_Identity=26.5917602996255, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787601, Length=145, Percent_Identity=28.9655172413793, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789506, Length=284, Percent_Identity=25.3521126760563, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=25.1028806584362, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790262, Length=251, Percent_Identity=29.0836653386454, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788626, Length=291, Percent_Identity=26.1168384879725, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI145693193, Length=288, Percent_Identity=27.4305555555556, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787806, Length=279, Percent_Identity=22.9390681003584, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI48994962, Length=265, Percent_Identity=26.7924528301887, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786401, Length=311, Percent_Identity=25.7234726688103, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082132, Length=253, Percent_Identity=22.1343873517787, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34614; Mature: 34614

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHH
GLLLVEQARTVLREVKVLKEMASQQGEAMSGPLHIGLIPTVGPYLLPQIIPMLHQVFPKL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
EMYLHEAQTAQLLAQLDSGKLDCAILALVKETEAFIEIPLFDEPMTLAVYSDHPWAEKER
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHEEECCCCCCCEEEEEECCCCCCCHHH
IAMPELAGEHLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLL
CCCHHHCCCEEEEEECCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEC
PDLAVPSQRQRDGVCYLPCYKPEPRRTIALVYRPGSPLRARYEQLAEAIREHMQQVMIQR
CCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
ETLKQAV
HHHHHCC
>Mature Secondary Structure
MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHH
GLLLVEQARTVLREVKVLKEMASQQGEAMSGPLHIGLIPTVGPYLLPQIIPMLHQVFPKL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
EMYLHEAQTAQLLAQLDSGKLDCAILALVKETEAFIEIPLFDEPMTLAVYSDHPWAEKER
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHEEECCCCCCCEEEEEECCCCCCCHHH
IAMPELAGEHLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLL
CCCHHHCCCEEEEEECCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEC
PDLAVPSQRQRDGVCYLPCYKPEPRRTIALVYRPGSPLRARYEQLAEAIREHMQQVMIQR
CCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
ETLKQAV
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA