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The map label for this gene is ompF [H]

Identifier: 238921673

GI number: 238921673

Start: 3714404

End: 3715534

Strand: Direct

Name: ompF [H]

Synonym: NT01EI_3834

Alternate gene names: 238921673

Gene position: 3714404-3715534 (Clockwise)

Preceding gene: 238921667

Following gene: 238921674

Centisome position: 97.43

GC content: 47.3

Gene sequence:

>1131_bases
ATGAATACAATCCGCTCGCTTGTGGCCCTGTCCACCATAGGCTGCATAGGTATTTTTCCGCTCATTTCACATGCAGCAGA
GATTTACAACCAGAACGGCAATCGCGTTTATTTAGATGGCTCTTTTAAGGTAAGACATTATTTTTCTCAAGATAAATATA
TTGCCGGAGATCAATCAAAGGTAAAGTTCACTCTACGTGGTGAAACCAAAATCAATGATCTTATGATTGGCTATGCACGT
TGGGAATACAATGTAAAATTAAACCAACCAGAAAGTGCTGGCAGCAGTAAAAACACAACGCGTATAGGATATGCCGGCAT
AGGCTTCGGACAATATGGAAGCTTTGATTATGGCCGGAACTACGGGATCCTGAACGATATTAATGGTTGGACCGGGGCGC
CTATTCCTGTATTCGGCGGCGTCTCTTATGACGGCGTCGATAACTTTATGACCTACCGTACCAATAACGTCGCCACATAC
CGTAACCGTAATATTTTTAACTTGGTTGACGGCCTGGATTTTGGCCTACAGATACAGGGTAAAAATGACGGCTGGAACGC
CCCGGAAACTCAGACGGGTCCGCTCAGCAGCAACCCTCGCGGCGTCGCGCACCAGAACGGCAATGGGGTTGGGAGCTCGC
TGATTTATCGTTTCGGGAATGGTCTCAGCATCGGAGGAGCATACGCTAATTCAGCGCGTACGCTGGAGCAGCGTCAGGAT
GACCTGGGTAAACGGGCGGATGGCTGGAACGTTGGTGCCCGCTATGATAACCATAATGTCTATCTGGCCGCCATCTATGG
TGAAGTCAAGAATATGCACTATATTGGTAAACAGGATAGATTTGCACCGAAGGCACGTGGATATGAGCTGCTGGCCCAGT
ATCAGTTCGACTGCGGCCTGAAACCCTCCCTCGCCTATCTCAACGGAACGGCAAAAGATCTCAAGGGTAACGCAAGCAGT
AACCAAACCTATGTAAAATTCATCGATCTGGCGACCACCTACTCTTTTAACAAGAACCTGGCGCTCATCTTTGAATATAA
GATCAACCTGCTGGATGACAACACCTTCACGCGAAATAACGGTATCAGCACCGATGATGTCTTTGTCACTATGCTGAACT
ATAAGTTCTAA

Upstream 100 bases:

>100_bases
TTCATCACAAAAAACCGTCATTCATTTGTATAATCATAAAAAAGCAACGCCGTTGCTCTTATTTTTAATAACGTCTAATA
ATTATCAGCAGGAATCAATG

Downstream 100 bases:

>100_bases
TATTTTCTCCTGCCGGGATCGCCTAACGCTAATGGCGGTCCCCTCTTCAATTGATACCCTCTGATACCCTATGCTTTATG
AAAAAAAAAGAAAACCGAGC

Product: outer membrane protein N

Products: NA

Alternate protein names: Porin ompF [H]

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MNTIRSLVALSTIGCIGIFPLISHAAEIYNQNGNRVYLDGSFKVRHYFSQDKYIAGDQSKVKFTLRGETKINDLMIGYAR
WEYNVKLNQPESAGSSKNTTRIGYAGIGFGQYGSFDYGRNYGILNDINGWTGAPIPVFGGVSYDGVDNFMTYRTNNVATY
RNRNIFNLVDGLDFGLQIQGKNDGWNAPETQTGPLSSNPRGVAHQNGNGVGSSLIYRFGNGLSIGGAYANSARTLEQRQD
DLGKRADGWNVGARYDNHNVYLAAIYGEVKNMHYIGKQDRFAPKARGYELLAQYQFDCGLKPSLAYLNGTAKDLKGNASS
NQTYVKFIDLATTYSFNKNLALIFEYKINLLDDNTFTRNNGISTDDVFVTMLNYKF

Sequences:

>Translated_376_residues
MNTIRSLVALSTIGCIGIFPLISHAAEIYNQNGNRVYLDGSFKVRHYFSQDKYIAGDQSKVKFTLRGETKINDLMIGYAR
WEYNVKLNQPESAGSSKNTTRIGYAGIGFGQYGSFDYGRNYGILNDINGWTGAPIPVFGGVSYDGVDNFMTYRTNNVATY
RNRNIFNLVDGLDFGLQIQGKNDGWNAPETQTGPLSSNPRGVAHQNGNGVGSSLIYRFGNGLSIGGAYANSARTLEQRQD
DLGKRADGWNVGARYDNHNVYLAAIYGEVKNMHYIGKQDRFAPKARGYELLAQYQFDCGLKPSLAYLNGTAKDLKGNASS
NQTYVKFIDLATTYSFNKNLALIFEYKINLLDDNTFTRNNGISTDDVFVTMLNYKF
>Mature_376_residues
MNTIRSLVALSTIGCIGIFPLISHAAEIYNQNGNRVYLDGSFKVRHYFSQDKYIAGDQSKVKFTLRGETKINDLMIGYAR
WEYNVKLNQPESAGSSKNTTRIGYAGIGFGQYGSFDYGRNYGILNDINGWTGAPIPVFGGVSYDGVDNFMTYRTNNVATY
RNRNIFNLVDGLDFGLQIQGKNDGWNAPETQTGPLSSNPRGVAHQNGNGVGSSLIYRFGNGLSIGGAYANSARTLEQRQD
DLGKRADGWNVGARYDNHNVYLAAIYGEVKNMHYIGKQDRFAPKARGYELLAQYQFDCGLKPSLAYLNGTAKDLKGNASS
NQTYVKFIDLATTYSFNKNLALIFEYKINLLDDNTFTRNNGISTDDVFVTMLNYKF

Specific function: OmpF is a porin that forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane. It is also a receptor for the bacteriophage T2 [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=361, Percent_Identity=45.4293628808864, Blast_Score=294, Evalue=7e-81,
Organism=Escherichia coli, GI1788544, Length=357, Percent_Identity=44.8179271708684, Blast_Score=280, Evalue=1e-76,
Organism=Escherichia coli, GI1786436, Length=376, Percent_Identity=42.2872340425532, Blast_Score=269, Evalue=2e-73,
Organism=Escherichia coli, GI1787160, Length=368, Percent_Identity=40.2173913043478, Blast_Score=219, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41816; Mature: 41816

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTIRSLVALSTIGCIGIFPLISHAAEIYNQNGNRVYLDGSFKVRHYFSQDKYIAGDQSK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEECCCCEEECCCCE
VKFTLRGETKINDLMIGYARWEYNVKLNQPESAGSSKNTTRIGYAGIGFGQYGSFDYGRN
EEEEEECCCEECEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
YGILNDINGWTGAPIPVFGGVSYDGVDNFMTYRTNNVATYRNRNIFNLVDGLDFGLQIQG
CCCEECCCCCCCCCCEEECCCCCCCCCCEEEEECCCEEEECCCCEEEHHCCCCCCEEEEE
KNDGWNAPETQTGPLSSNPRGVAHQNGNGVGSSLIYRFGNGLSIGGAYANSARTLEQRQD
CCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHH
DLGKRADGWNVGARYDNHNVYLAAIYGEVKNMHYIGKQDRFAPKARGYELLAQYQFDCGL
HHCCCCCCCCCCCEECCCCEEEEEEEECCCCEEEECCCCCCCCCCCCEEEEEEEECCCCC
KPSLAYLNGTAKDLKGNASSNQTYVKFIDLATTYSFNKNLALIFEYKINLLDDNTFTRNN
CCCEEEECCCHHHHCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCEECCC
GISTDDVFVTMLNYKF
CCCCCCEEEEEEECCC
>Mature Secondary Structure
MNTIRSLVALSTIGCIGIFPLISHAAEIYNQNGNRVYLDGSFKVRHYFSQDKYIAGDQSK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEEECCCCEEECCCCE
VKFTLRGETKINDLMIGYARWEYNVKLNQPESAGSSKNTTRIGYAGIGFGQYGSFDYGRN
EEEEEECCCEECEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
YGILNDINGWTGAPIPVFGGVSYDGVDNFMTYRTNNVATYRNRNIFNLVDGLDFGLQIQG
CCCEECCCCCCCCCCEEECCCCCCCCCCEEEEECCCEEEECCCCEEEHHCCCCCCEEEEE
KNDGWNAPETQTGPLSSNPRGVAHQNGNGVGSSLIYRFGNGLSIGGAYANSARTLEQRQD
CCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHH
DLGKRADGWNVGARYDNHNVYLAAIYGEVKNMHYIGKQDRFAPKARGYELLAQYQFDCGL
HHCCCCCCCCCCCEECCCCEEEEEEEECCCCEEEECCCCCCCCCCCCEEEEEEEECCCCC
KPSLAYLNGTAKDLKGNASSNQTYVKFIDLATTYSFNKNLALIFEYKINLLDDNTFTRNN
CCCEEEECCCHHHHCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCEECCC
GISTDDVFVTMLNYKF
CCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274033 [H]