| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238921488
Identifier: 238921488
GI number: 238921488
Start: 3525857
End: 3527803
Strand: Direct
Name: 238921488
Synonym: NT01EI_3640
Alternate gene names: NA
Gene position: 3525857-3527803 (Clockwise)
Preceding gene: 238921487
Following gene: 238921489
Centisome position: 92.49
GC content: 58.24
Gene sequence:
>1947_bases ATGGCGGCATCAGAGCTGGTCGCCCAACCGTTACCGCAGACCGAGACGGCATCGACGGCGCGTGTCGACCTCAACCGCAA CGACGGTATTCCAGAAAAGCCTCGTACTCTGCTGGAGTACGTAGGGCAAGAAAAGGATTTTTTCGCCTATCTGCGTGAAC ATCACCCGATGTTCAAGTACGAGTCCGCCGGTCGCCTGGTTGGGCAATACAGCATCAGCGATCGCCAGGAGGAGTTTGTC GACTTCGGTGGCGGCAACAAATATGCCGCCAAGCAGGGCCGCCCAACCGCGATCACCTACCGGCTCGGCTTTGAGTCTAT TCTCGACTTCCCCAATAAATATGTCGGCCCGGAGAAGTGTGGCGAGTGCCACCCGGCCCAGTACCAAGCCTGGGAACGTT CACGCCACGCCAAAACCGTCCGATTCCCCAGCGAAATGGTTGAAATTCCCGACGGCGATCTGAACCGTGGACTGTACGGT AGCAAGGCTTCCGTCTTACCCGAGGGCATTACGGCAGACGCCATTTACGCGGTGATTGGAACGCCGCGGACCAAATATGG TTTTATCGATGGCTGGATGGTCCGCGGAACCTATCATATCGAGGGTGGGCTGCTCAGGGACGGCACCGGCTCCATGGTTG CCGGCGGTAATCAGTTCTCCCGCGGGTGGGCCCAGTTCATCACGCCGGACATGGCGAAAAAGATCGCCAGCTTCGTCCCG GGATTCCCCACCAAGCTGGAGGACTTCGGCTCCCAGGGGTCCAGCGTCTGGGGTATGACCTCTTACGGCGCGTCCAACCG TACCCGAATGCTGTTTCAGCCTGCCAGCGCCTACTGTGAGGTGTGCCACTCCATGAAGTTTGACTTCAACAGCAGCGAGG AGTTTATCGCCGCGCTGGGCAAACCGGATGAGTTGCGCAAACATACCATCGCCAAGGGAATTAGCTGCGAAGAGTGCCAT GGCGCGGGCGCCCATCTGTACGGCGCCCGCGGGGCCGGTATCCCCTCAAACTGCGAGCGCTGCCATCAGCGCTTCGCATA CAATGAGGCCGATGCCGAGGCCAACCCGCTAAAACCATTTAACAGCTATTTCAAATCATCCTGCCCCTCCTGCGGCACCG AGGGTTCGCAGATGTACAACACCGTCCACTACGAGAAAGGCATGCGCTGCAGTACCTGCCACGACCCCCATGCCGTCACC GCCAATGACTGGAAGGAGGGCTTTACCAAGACCACGCTGAAAAAGCAGTGCCAGGATTGCCACACCGAGCAAGCCCAATT TTTTGCTCAGGGCGATACCCACGGGCAAAGCAGCTGTACCGCCTGTCATATGCCCAATATGGGGAGCTGTGAAAACTTTG CCACGATCCAGTTCCCCGATATGGCCGGATTCGACAACGTACGGCGCGCCCATATCTGGAAAATCCGGGTAGACGAAACG GCAAAAACCCTCAATCCCCCGGAGGGAAAGCCCCGCACTGCTGATGTCAAAGGCTGGACCATCGCCAAGCAGGATGGCAA ACCTTACCTGGATCTGATGTGGTCCTGCGGACGGACAGCATTCAGCGATGGCGACGTGGTCGAAGGCGGCGGATGCCACA GTCCGGTACAAACGGTGCTCTCTGAACGACTGCAGTTTAAGGATCAGGAGAGCATCTATGCCAAGGTGATGGAGTGGCAA ACACCGGTCAGGGACGGCTACGTACGTATTCGTAGCGGGCTGACACGCATCGAAAAACGTCTGGCGAAGACGCCCGATCT GGCCCTGAACGATCAGGTGCAAATCCGGTTGCTCAGCGGCCAGGCGCGTCAGCAGGCTGATCTGATTGAAAAGGATGGCT CTTGGGGGCTACATGCGCCCAACTATGCCAAGGTCCGCATGGAGGAGGCTCTGCTGTATATCGAACAGGCGGAAACGATC CTCAATGGGGGCAAGGCGCCCAAATAA
Upstream 100 bases:
>100_bases AATACTCCATCGCACCGCGCTTTATTAAGTCAAGGAGCTGACGATGAAAATACCCACCCGCTTAATCTGTCTCATTATAG GAATGTGCTGTACGTCATTA
Downstream 100 bases:
>100_bases CGTCGGTCGCCGGATGCCCAGCGCTGTCCGGCGACGCTTACCACCAAGGAGATCATTATGATGCGCTCCCCGTCACTGAC CGCGATACTGATGGCACTGA
Product: hypothetical protein
Products: NA
Alternate protein names: tRNA Synthetase Class II; Cytochrome C Family Protein
Number of amino acids: Translated: 648; Mature: 647
Protein sequence:
>648_residues MAASELVAQPLPQTETASTARVDLNRNDGIPEKPRTLLEYVGQEKDFFAYLREHHPMFKYESAGRLVGQYSISDRQEEFV DFGGGNKYAAKQGRPTAITYRLGFESILDFPNKYVGPEKCGECHPAQYQAWERSRHAKTVRFPSEMVEIPDGDLNRGLYG SKASVLPEGITADAIYAVIGTPRTKYGFIDGWMVRGTYHIEGGLLRDGTGSMVAGGNQFSRGWAQFITPDMAKKIASFVP GFPTKLEDFGSQGSSVWGMTSYGASNRTRMLFQPASAYCEVCHSMKFDFNSSEEFIAALGKPDELRKHTIAKGISCEECH GAGAHLYGARGAGIPSNCERCHQRFAYNEADAEANPLKPFNSYFKSSCPSCGTEGSQMYNTVHYEKGMRCSTCHDPHAVT ANDWKEGFTKTTLKKQCQDCHTEQAQFFAQGDTHGQSSCTACHMPNMGSCENFATIQFPDMAGFDNVRRAHIWKIRVDET AKTLNPPEGKPRTADVKGWTIAKQDGKPYLDLMWSCGRTAFSDGDVVEGGGCHSPVQTVLSERLQFKDQESIYAKVMEWQ TPVRDGYVRIRSGLTRIEKRLAKTPDLALNDQVQIRLLSGQARQQADLIEKDGSWGLHAPNYAKVRMEEALLYIEQAETI LNGGKAPK
Sequences:
>Translated_648_residues MAASELVAQPLPQTETASTARVDLNRNDGIPEKPRTLLEYVGQEKDFFAYLREHHPMFKYESAGRLVGQYSISDRQEEFV DFGGGNKYAAKQGRPTAITYRLGFESILDFPNKYVGPEKCGECHPAQYQAWERSRHAKTVRFPSEMVEIPDGDLNRGLYG SKASVLPEGITADAIYAVIGTPRTKYGFIDGWMVRGTYHIEGGLLRDGTGSMVAGGNQFSRGWAQFITPDMAKKIASFVP GFPTKLEDFGSQGSSVWGMTSYGASNRTRMLFQPASAYCEVCHSMKFDFNSSEEFIAALGKPDELRKHTIAKGISCEECH GAGAHLYGARGAGIPSNCERCHQRFAYNEADAEANPLKPFNSYFKSSCPSCGTEGSQMYNTVHYEKGMRCSTCHDPHAVT ANDWKEGFTKTTLKKQCQDCHTEQAQFFAQGDTHGQSSCTACHMPNMGSCENFATIQFPDMAGFDNVRRAHIWKIRVDET AKTLNPPEGKPRTADVKGWTIAKQDGKPYLDLMWSCGRTAFSDGDVVEGGGCHSPVQTVLSERLQFKDQESIYAKVMEWQ TPVRDGYVRIRSGLTRIEKRLAKTPDLALNDQVQIRLLSGQARQQADLIEKDGSWGLHAPNYAKVRMEEALLYIEQAETI LNGGKAPK >Mature_647_residues AASELVAQPLPQTETASTARVDLNRNDGIPEKPRTLLEYVGQEKDFFAYLREHHPMFKYESAGRLVGQYSISDRQEEFVD FGGGNKYAAKQGRPTAITYRLGFESILDFPNKYVGPEKCGECHPAQYQAWERSRHAKTVRFPSEMVEIPDGDLNRGLYGS KASVLPEGITADAIYAVIGTPRTKYGFIDGWMVRGTYHIEGGLLRDGTGSMVAGGNQFSRGWAQFITPDMAKKIASFVPG FPTKLEDFGSQGSSVWGMTSYGASNRTRMLFQPASAYCEVCHSMKFDFNSSEEFIAALGKPDELRKHTIAKGISCEECHG AGAHLYGARGAGIPSNCERCHQRFAYNEADAEANPLKPFNSYFKSSCPSCGTEGSQMYNTVHYEKGMRCSTCHDPHAVTA NDWKEGFTKTTLKKQCQDCHTEQAQFFAQGDTHGQSSCTACHMPNMGSCENFATIQFPDMAGFDNVRRAHIWKIRVDETA KTLNPPEGKPRTADVKGWTIAKQDGKPYLDLMWSCGRTAFSDGDVVEGGGCHSPVQTVLSERLQFKDQESIYAKVMEWQT PVRDGYVRIRSGLTRIEKRLAKTPDLALNDQVQIRLLSGQARQQADLIEKDGSWGLHAPNYAKVRMEEALLYIEQAETIL NGGKAPK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71964; Mature: 71832
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: PS51008 MULTIHEME_CYTC L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASELVAQPLPQTETASTARVDLNRNDGIPEKPRTLLEYVGQEKDFFAYLREHHPMFKY CCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCEEE ESAGRLVGQYSISDRQEEFVDFGGGNKYAAKQGRPTAITYRLGFESILDFPNKYVGPEKC CCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHCCCHHCCCHHHC GECHPAQYQAWERSRHAKTVRFPSEMVEIPDGDLNRGLYGSKASVLPEGITADAIYAVIG CCCCCHHHHHHHHHHCCCEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEC TPRTKYGFIDGWMVRGTYHIEGGLLRDGTGSMVAGGNQFSRGWAQFITPDMAKKIASFVP CCCCCCCCCCCEEEEEEEEECCCEEECCCCCEEECCCHHHHHHHHHCCHHHHHHHHHHCC GFPTKLEDFGSQGSSVWGMTSYGASNRTRMLFQPASAYCEVCHSMKFDFNSSEEFIAALG CCCHHHHHHCCCCCCCCEEECCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHCC KPDELRKHTIAKGISCEECHGAGAHLYGARGAGIPSNCERCHQRFAYNEADAEANPLKPF CHHHHHHHHHHCCCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH NSYFKSSCPSCGTEGSQMYNTVHYEKGMRCSTCHDPHAVTANDWKEGFTKTTLKKQCQDC HHHHHHCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH HTEQAQFFAQGDTHGQSSCTACHMPNMGSCENFATIQFPDMAGFDNVRRAHIWKIRVDET HHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEECCH AKTLNPPEGKPRTADVKGWTIAKQDGKPYLDLMWSCGRTAFSDGDVVEGGGCHSPVQTVL HHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHH SERLQFKDQESIYAKVMEWQTPVRDGYVRIRSGLTRIEKRLAKTPDLALNDQVQIRLLSG HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC QARQQADLIEKDGSWGLHAPNYAKVRMEEALLYIEQAETILNGGKAPK CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AASELVAQPLPQTETASTARVDLNRNDGIPEKPRTLLEYVGQEKDFFAYLREHHPMFKY CCHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCEEE ESAGRLVGQYSISDRQEEFVDFGGGNKYAAKQGRPTAITYRLGFESILDFPNKYVGPEKC CCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHCCCHHCCCHHHC GECHPAQYQAWERSRHAKTVRFPSEMVEIPDGDLNRGLYGSKASVLPEGITADAIYAVIG CCCCCHHHHHHHHHHCCCEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEC TPRTKYGFIDGWMVRGTYHIEGGLLRDGTGSMVAGGNQFSRGWAQFITPDMAKKIASFVP CCCCCCCCCCCEEEEEEEEECCCEEECCCCCEEECCCHHHHHHHHHCCHHHHHHHHHHCC GFPTKLEDFGSQGSSVWGMTSYGASNRTRMLFQPASAYCEVCHSMKFDFNSSEEFIAALG CCCHHHHHHCCCCCCCCEEECCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHCC KPDELRKHTIAKGISCEECHGAGAHLYGARGAGIPSNCERCHQRFAYNEADAEANPLKPF CHHHHHHHHHHCCCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH NSYFKSSCPSCGTEGSQMYNTVHYEKGMRCSTCHDPHAVTANDWKEGFTKTTLKKQCQDC HHHHHHCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH HTEQAQFFAQGDTHGQSSCTACHMPNMGSCENFATIQFPDMAGFDNVRRAHIWKIRVDET HHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEECCH AKTLNPPEGKPRTADVKGWTIAKQDGKPYLDLMWSCGRTAFSDGDVVEGGGCHSPVQTVL HHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHH SERLQFKDQESIYAKVMEWQTPVRDGYVRIRSGLTRIEKRLAKTPDLALNDQVQIRLLSG HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC QARQQADLIEKDGSWGLHAPNYAKVRMEEALLYIEQAETILNGGKAPK CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA