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The map label for this gene is ydhU [H]

Identifier: 238921487

GI number: 238921487

Start: 3524934

End: 3525719

Strand: Direct

Name: ydhU [H]

Synonym: NT01EI_3639

Alternate gene names: 238921487

Gene position: 3524934-3525719 (Clockwise)

Preceding gene: 238921486

Following gene: 238921488

Centisome position: 92.46

GC content: 55.6

Gene sequence:

>786_bases
ATGACCGCCGAACAGCTGCAATCCTACCTCATGCAACGCACCGTCGTTGATTCACCCGATGCGTGGCCAGAATGGCTGAT
AACACTGGCGCTGGCCTGGCTTGGGCTGTGTGCACTGCTGATACTGCATGCCCTACTGCACCGCCGTCTTCGCCCCCTAC
CTGCGGTACGTAGCGGTGCTGAGCATCTCTATCTTTACCCACGCACCCTGCGACTGTGGCACCTGCTCAATGCACTGCTG
TTCCTGTTTTTACTGTTCAGCGGACTGCTGCTCCATGCGGTCCCACTCCCCCTGGCGGCCACCCGCTGGCTGGTGCGCTG
GCATCCCTACGCAGGTTATCTGCTACTGGGACTGTGGTGTGGTTTTATCCTGCTCAACGCGCTGGGCACCAATGGCGTTC
ACTACCATATCCGCTGGCGGGGGATCGCGACGCGCTGTCAGCGTCAGGCCCATTTTTACCTGATCGGTATTTTTCACGCG
GAGCCGCATCCCTTCCACGCCAGCCCAACGCAAAAGTTTAACCCGCTACAGCAGCTAGGCTATTGCACGATAATGTATCT
CGTGGTGCCTGCGCTATTGCTCAGCGGTCTCGGCCTCGCCCATCCCCTATTCCTGCCCGAAGGAACCGCCTACTGGGTAT
TACAGGGACACCTTTTACTCTCATTCTTTATTTTAATGTTTATTAGCGTACATATTTATCTCTGCACGCTGGGTGACACG
CCCAGAGAAATTTTTATGGCCATGGTGGATGGCTATCACCGCCACCATGCAACAGAAAATAAATAA

Upstream 100 bases:

>100_bases
CGATCTGAAGCTGGCGCTGGCGCCCCACTATCAGCATCACCTGGCTGGCACACGCCACAGCCGCGTCTACCGCCTCACCG
CAGATGACTAGGAGCCGCCC

Downstream 100 bases:

>100_bases
ATGGCGGAAAATAAAAAAACACCACACCGCTGAATATAATACTCCATCGCACCGCGCTTTATTAAGTCAAGGAGCTGACG
ATGAAAATACCCACCCGCTT

Product: YdhU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTAEQLQSYLMQRTVVDSPDAWPEWLITLALAWLGLCALLILHALLHRRLRPLPAVRSGAEHLYLYPRTLRLWHLLNALL
FLFLLFSGLLLHAVPLPLAATRWLVRWHPYAGYLLLGLWCGFILLNALGTNGVHYHIRWRGIATRCQRQAHFYLIGIFHA
EPHPFHASPTQKFNPLQQLGYCTIMYLVVPALLLSGLGLAHPLFLPEGTAYWVLQGHLLLSFFILMFISVHIYLCTLGDT
PREIFMAMVDGYHRHHATENK

Sequences:

>Translated_261_residues
MTAEQLQSYLMQRTVVDSPDAWPEWLITLALAWLGLCALLILHALLHRRLRPLPAVRSGAEHLYLYPRTLRLWHLLNALL
FLFLLFSGLLLHAVPLPLAATRWLVRWHPYAGYLLLGLWCGFILLNALGTNGVHYHIRWRGIATRCQRQAHFYLIGIFHA
EPHPFHASPTQKFNPLQQLGYCTIMYLVVPALLLSGLGLAHPLFLPEGTAYWVLQGHLLLSFFILMFISVHIYLCTLGDT
PREIFMAMVDGYHRHHATENK
>Mature_260_residues
TAEQLQSYLMQRTVVDSPDAWPEWLITLALAWLGLCALLILHALLHRRLRPLPAVRSGAEHLYLYPRTLRLWHLLNALLF
LFLLFSGLLLHAVPLPLAATRWLVRWHPYAGYLLLGLWCGFILLNALGTNGVHYHIRWRGIATRCQRQAHFYLIGIFHAE
PHPFHASPTQKFNPLQQLGYCTIMYLVVPALLLSGLGLAHPLFLPEGTAYWVLQGHLLLSFFILMFISVHIYLCTLGDTP
REIFMAMVDGYHRHHATENK

Specific function: Unknown

COG id: COG4117

COG function: function code C; Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787959, Length=256, Percent_Identity=47.265625, Blast_Score=204, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011577
- InterPro:   IPR016174 [H]

Pfam domain/function: PF01292 Ni_hydr_CYTB [H]

EC number: NA

Molecular weight: Translated: 29979; Mature: 29848

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAEQLQSYLMQRTVVDSPDAWPEWLITLALAWLGLCALLILHALLHRRLRPLPAVRSGA
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC
EHLYLYPRTLRLWHLLNALLFLFLLFSGLLLHAVPLPLAATRWLVRWHPYAGYLLLGLWC
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHH
GFILLNALGTNGVHYHIRWRGIATRCQRQAHFYLIGIFHAEPHPFHASPTQKFNPLQQLG
HHHHHHHHCCCCEEEEEEECHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHH
YCTIMYLVVPALLLSGLGLAHPLFLPEGTAYWVLQGHLLLSFFILMFISVHIYLCTLGDT
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHEECCCC
PREIFMAMVDGYHRHHATENK
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TAEQLQSYLMQRTVVDSPDAWPEWLITLALAWLGLCALLILHALLHRRLRPLPAVRSGA
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC
EHLYLYPRTLRLWHLLNALLFLFLLFSGLLLHAVPLPLAATRWLVRWHPYAGYLLLGLWC
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHH
GFILLNALGTNGVHYHIRWRGIATRCQRQAHFYLIGIFHAEPHPFHASPTQKFNPLQQLG
HHHHHHHHCCCCEEEEEEECHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHH
YCTIMYLVVPALLLSGLGLAHPLFLPEGTAYWVLQGHLLLSFFILMFISVHIYLCTLGDT
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHEECCCC
PREIFMAMVDGYHRHHATENK
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9023191; 9097039; 9278503 [H]