| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is hslO
Identifier: 238921485
GI number: 238921485
Start: 3523184
End: 3524065
Strand: Direct
Name: hslO
Synonym: NT01EI_3637
Alternate gene names: 238921485
Gene position: 3523184-3524065 (Clockwise)
Preceding gene: 238921484
Following gene: 238921486
Centisome position: 92.42
GC content: 61.0
Gene sequence:
>882_bases ATGCCCCATCACGACCAATTACATCGCTACCTGTTTGACAATCTGGCCGTACGCGGCGAGCTGGTCAACGCCAGCGCCAC CTATGCCCGCATACTGGAAAACCACGACTACCCGGCCGCGGTGCGCGCGCTGCTGGGTGAACTGTTGGTCGCCACCACTC TGCTGACCGCTACCCTGAAGTTCGACGGCGATATCACAGTACAGCTGCAGGGTGACGGTCCGCTGAAGCTGGCGGTGATC AATGGCAACCATCGTCAGGAGATGCGCGGCGTCGCCCGCCTGCAGGGCGATATCGCCGATGGCAGCAGCCTGAAACACAT GCTGGGCAACGGTATCATGGTGATCACCATTACACCGAAAGAAGGAGAGCGTTATCAGGGCGTCGTGGCGCTGGAAGGCG ATACACTGTCCAACTGTCTGGAGGCCTACTTCATGCAGTCCGAGCAGCTGCCGACCCGCCTGTTTATGTTCACCGGGGAG CAGGACGGTCAACCGGCGGCGGCCGGTATGCTGCTGCAGATCCTGCCGACGCAGCCCAATAACGTTGACGATCTGACTCA CCTGTCGCACCTTACGACCACTGTTACCCCGCAGGAGCTGTTTACGCTGCCCGCCAACGAGGTGCTGTACCGCCTGTACA ATCAGGAGCAGGTGACCCTGTTTGAGCCACAGCCGATCGCCTTCCTCTGCGGTTGCTCCCGCGGGCGCAGCGCCAGCGCG CTGATGAGCCTGCCACCCCAGCAGCTGGAAGAGCTGTTGGCTGAGCGTGGCAGCATCGATATCCATTGCGACTACTGCGG TAGCCACTACCTGTTCGATCGGGTCGATATCGACGCATTACGTGCCGGAGCACAGCCGGACGAAGCGGGTCAGCTACACT AA
Upstream 100 bases:
>100_bases TGCCACACCCGGATCGGCGTCCCGATAAAAAAGAGCGCCGCAATCTGCTTAAATTTAAATACGACCAGTCGGAATGACCG GCGCCTGAAGAGAGAGAACT
Downstream 100 bases:
>100_bases TAATCGTCTTTCCTCGGGGGAATCATCCCCCGTTTTTATTTATTATTTTATTTTAATTAACTCGGGGAATATTAAAGACA GATTATTCCCTACCTCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Heat shock protein 33 homolog; HSP33
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MPHHDQLHRYLFDNLAVRGELVNASATYARILENHDYPAAVRALLGELLVATTLLTATLKFDGDITVQLQGDGPLKLAVI NGNHRQEMRGVARLQGDIADGSSLKHMLGNGIMVITITPKEGERYQGVVALEGDTLSNCLEAYFMQSEQLPTRLFMFTGE QDGQPAAAGMLLQILPTQPNNVDDLTHLSHLTTTVTPQELFTLPANEVLYRLYNQEQVTLFEPQPIAFLCGCSRGRSASA LMSLPPQQLEELLAERGSIDIHCDYCGSHYLFDRVDIDALRAGAQPDEAGQLH
Sequences:
>Translated_293_residues MPHHDQLHRYLFDNLAVRGELVNASATYARILENHDYPAAVRALLGELLVATTLLTATLKFDGDITVQLQGDGPLKLAVI NGNHRQEMRGVARLQGDIADGSSLKHMLGNGIMVITITPKEGERYQGVVALEGDTLSNCLEAYFMQSEQLPTRLFMFTGE QDGQPAAAGMLLQILPTQPNNVDDLTHLSHLTTTVTPQELFTLPANEVLYRLYNQEQVTLFEPQPIAFLCGCSRGRSASA LMSLPPQQLEELLAERGSIDIHCDYCGSHYLFDRVDIDALRAGAQPDEAGQLH >Mature_292_residues PHHDQLHRYLFDNLAVRGELVNASATYARILENHDYPAAVRALLGELLVATTLLTATLKFDGDITVQLQGDGPLKLAVIN GNHRQEMRGVARLQGDIADGSSLKHMLGNGIMVITITPKEGERYQGVVALEGDTLSNCLEAYFMQSEQLPTRLFMFTGEQ DGQPAAAGMLLQILPTQPNNVDDLTHLSHLTTTVTPQELFTLPANEVLYRLYNQEQVTLFEPQPIAFLCGCSRGRSASAL MSLPPQQLEELLAERGSIDIHCDYCGSHYLFDRVDIDALRAGAQPDEAGQLH
Specific function: Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
COG id: COG1281
COG function: function code O; Disulfide bond chaperones of the HSP33 family
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HSP33 family
Homologues:
Organism=Escherichia coli, GI87082260, Length=286, Percent_Identity=65.3846153846154, Blast_Score=401, Evalue=1e-113,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HSLO_EDWI9 (C5BGR8)
Other databases:
- EMBL: CP001600 - RefSeq: YP_002935000.1 - ProteinModelPortal: C5BGR8 - GeneID: 7962145 - GenomeReviews: CP001600_GR - KEGG: eic:NT01EI_3637 - OMA: AMTIDQG - ProtClustDB: CLSK2813697 - GO: GO:0005737 - HAMAP: MF_00117 - InterPro: IPR000397 - InterPro: IPR016154 - InterPro: IPR016153 - InterPro: IPR023212 - Gene3D: G3DSA:1.10.287.480 - Gene3D: G3DSA:3.90.1280.10 - Gene3D: G3DSA:3.55.30.10 - PIRSF: PIRSF005261
Pfam domain/function: PF01430 HSP33; SSF64397 Heat_shock_Hsp33_N
EC number: NA
Molecular weight: Translated: 32248; Mature: 32117
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHHDQLHRYLFDNLAVRGELVNASATYARILENHDYPAAVRALLGELLVATTLLTATLK CCCHHHHHHHHHHHHHHEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEE FDGDITVQLQGDGPLKLAVINGNHRQEMRGVARLQGDIADGSSLKHMLGNGIMVITITPK ECCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEEECC EGERYQGVVALEGDTLSNCLEAYFMQSEQLPTRLFMFTGEQDGQPAAAGMLLQILPTQPN CCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHCEEEEEECCCCC NVDDLTHLSHLTTTVTPQELFTLPANEVLYRLYNQEQVTLFEPQPIAFLCGCSRGRSASA CHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCHH LMSLPPQQLEELLAERGSIDIHCDYCGSHYLFDRVDIDALRAGAQPDEAGQLH HHCCCHHHHHHHHHHCCCEEEEEECCCCCEEEECCCHHHHHCCCCCCCCCCCC >Mature Secondary Structure PHHDQLHRYLFDNLAVRGELVNASATYARILENHDYPAAVRALLGELLVATTLLTATLK CCHHHHHHHHHHHHHHEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEE FDGDITVQLQGDGPLKLAVINGNHRQEMRGVARLQGDIADGSSLKHMLGNGIMVITITPK ECCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEEECC EGERYQGVVALEGDTLSNCLEAYFMQSEQLPTRLFMFTGEQDGQPAAAGMLLQILPTQPN CCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHCEEEEEECCCCC NVDDLTHLSHLTTTVTPQELFTLPANEVLYRLYNQEQVTLFEPQPIAFLCGCSRGRSASA CHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCHH LMSLPPQQLEELLAERGSIDIHCDYCGSHYLFDRVDIDALRAGAQPDEAGQLH HHCCCHHHHHHHHHHCCCEEEEEECCCCCEEEECCCHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA