Click here to switch to the map view.

The map label for this gene is ydhX [H]

Identifier: 238921486

GI number: 238921486

Start: 3524289

End: 3524924

Strand: Direct

Name: ydhX [H]

Synonym: NT01EI_3638

Alternate gene names: 238921486

Gene position: 3524289-3524924 (Clockwise)

Preceding gene: 238921485

Following gene: 238921487

Centisome position: 92.44

GC content: 61.01

Gene sequence:

>636_bases
ATGAAGCATTATTCACGCCGCAGCATTATTGTCGGCGCCGGATTTATCTTGCTGGCACCCGGCATACTGTTATCCAGCTC
CACGCGTAAACGGCAGCAGTTTGCCCTGATCCACGATCAGTCAAAGTGTGTCGGCTGCAATGAGTGTATCAACGCCTGCA
ACCAGCTCAACCGGGTTGCCCCCGGCTACGCCCGGCTGGCCATCATCCCACTGCCTGCCAACGATCCGCACGCGGCAACA
CCGCCCCACTTCCGTCATGGCTGTCAGCACTGCGATCCGGCGCCCTGTCTGGAGGTCTGCCCCAGTCAGGCCACCTATCG
CGATGCACATGGCCTGATACAAATCGATACCCGTCGCTGCACAGGCTGCGGCTACTGTATCCGCGCCTGCCCCTACCAGG
TACGCTATCTGCACCCGCAGCGCCGCGTCGCCGATAAGTGTGACTTCTGCAGCGCAACGCGCCTGCGCCATGGCTATATC
CCTATCTGCGTGCGTATCTGTCCCTACCATGCGCTCAGCTTCGGTGAGATTGGCTCTGCGGCATTCGATCTGAAGCTGGC
GCTGGCGCCCCACTATCAGCATCACCTGGCTGGCACACGCCACAGCCGCGTCTACCGCCTCACCGCAGATGACTAG

Upstream 100 bases:

>100_bases
TCTCTCTCTGTTCTCTATTCAACCTCCTTCTAGAATTTAATCCGCCTGCCAAAATAGAAAACATAAAAATAAAAAACGAA
TATATTTAATGGGATAATCT

Downstream 100 bases:

>100_bases
GAGCCGCCCATGACCGCCGAACAGCTGCAATCCTACCTCATGCAACGCACCGTCGTTGATTCACCCGATGCGTGGCCAGA
ATGGCTGATAACACTGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKHYSRRSIIVGAGFILLAPGILLSSSTRKRQQFALIHDQSKCVGCNECINACNQLNRVAPGYARLAIIPLPANDPHAAT
PPHFRHGCQHCDPAPCLEVCPSQATYRDAHGLIQIDTRRCTGCGYCIRACPYQVRYLHPQRRVADKCDFCSATRLRHGYI
PICVRICPYHALSFGEIGSAAFDLKLALAPHYQHHLAGTRHSRVYRLTADD

Sequences:

>Translated_211_residues
MKHYSRRSIIVGAGFILLAPGILLSSSTRKRQQFALIHDQSKCVGCNECINACNQLNRVAPGYARLAIIPLPANDPHAAT
PPHFRHGCQHCDPAPCLEVCPSQATYRDAHGLIQIDTRRCTGCGYCIRACPYQVRYLHPQRRVADKCDFCSATRLRHGYI
PICVRICPYHALSFGEIGSAAFDLKLALAPHYQHHLAGTRHSRVYRLTADD
>Mature_211_residues
MKHYSRRSIIVGAGFILLAPGILLSSSTRKRQQFALIHDQSKCVGCNECINACNQLNRVAPGYARLAIIPLPANDPHAAT
PPHFRHGCQHCDPAPCLEVCPSQATYRDAHGLIQIDTRRCTGCGYCIRACPYQVRYLHPQRRVADKCDFCSATRLRHGYI
PICVRICPYHALSFGEIGSAAFDLKLALAPHYQHHLAGTRHSRVYRLTADD

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI226510944, Length=208, Percent_Identity=43.2692307692308, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI2367345, Length=215, Percent_Identity=38.1395348837209, Blast_Score=167, Evalue=4e-43,
Organism=Escherichia coli, GI1787872, Length=153, Percent_Identity=32.6797385620915, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1790326, Length=162, Percent_Identity=29.6296296296296, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787122, Length=153, Percent_Identity=32.0261437908497, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787749, Length=193, Percent_Identity=29.0155440414508, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789370, Length=227, Percent_Identity=28.1938325991189, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI2367245, Length=148, Percent_Identity=32.4324324324324, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1789067, Length=159, Percent_Identity=30.188679245283, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23516; Mature: 23516

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
7.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHYSRRSIIVGAGFILLAPGILLSSSTRKRQQFALIHDQSKCVGCNECINACNQLNRVA
CCCCCCCEEEEECCHHHHCCCHHCCCCCHHHHHEEEEECCCCCCCHHHHHHHHHHHHHCC
PGYARLAIIPLPANDPHAATPPHFRHGCQHCDPAPCLEVCPSQATYRDAHGLIQIDTRRC
CCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHCCCCEEEECCCCC
TGCGYCIRACPYQVRYLHPQRRVADKCDFCSATRLRHGYIPICVRICPYHALSFGEIGSA
CCCCHHHHHCCCEEEEECHHHHHHHHCCCCCHHHHCCCCHHHHEEECCHHHCCCCCCCCC
AFDLKLALAPHYQHHLAGTRHSRVYRLTADD
EEEEEEEECCCHHHHHCCCCCCEEEEEECCC
>Mature Secondary Structure
MKHYSRRSIIVGAGFILLAPGILLSSSTRKRQQFALIHDQSKCVGCNECINACNQLNRVA
CCCCCCCEEEEECCHHHHCCCHHCCCCCHHHHHEEEEECCCCCCCHHHHHHHHHHHHHCC
PGYARLAIIPLPANDPHAATPPHFRHGCQHCDPAPCLEVCPSQATYRDAHGLIQIDTRRC
CCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHCCCCEEEECCCCC
TGCGYCIRACPYQVRYLHPQRRVADKCDFCSATRLRHGYIPICVRICPYHALSFGEIGSA
CCCCHHHHHCCCEEEEECHHHHHHHHCCCCCHHHHCCCCHHHHEEECCHHHCCCCCCCCC
AFDLKLALAPHYQHHLAGTRHSRVYRLTADD
EEEEEEEECCCHHHHHCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]