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The map label for this gene is ygaD [H]

Identifier: 238921103

GI number: 238921103

Start: 3114707

End: 3115195

Strand: Reverse

Name: ygaD [H]

Synonym: NT01EI_3242

Alternate gene names: 238921103

Gene position: 3115195-3114707 (Counterclockwise)

Preceding gene: 238921105

Following gene: 238921102

Centisome position: 81.71

GC content: 61.76

Gene sequence:

>489_bases
ATGGAGCAGTCGCTGACTGCGTTGAGCCAGAGCGTTGGTGAACGCTTGCGTGCCCGTGGAGCGCAGGTCACCTGTGCCGA
ATCCTGTACCGGAGGGCTGATAGCCAAGCTGTTGACCGATATTGTCGGCAGCTCGTACTATTTTGAGCGAGGGTTTGTCA
CGTACAGCAATCGGGCCAAAGAGGAGATGCTGGGAGTGCCGGGAAGTGTGCTGACGCAGCATGGGGCGGTAAGTGAGCCT
GTTGTGGCGGCGATGGCCGTTGGTGCCCTGCATGCGGCGCAGGCCGATCTGGCTATGGCGGTGAGTGGTATTGCCGGTCC
CGACGGCGGTAGCGCGCAGAAACCCGTCGGCACAGTCTGGTTTGGCTTTGTTGCCCGCGGCGGAGAACCCCTGTGTCTGC
GCCGGAATTTTGCCGGCGATCGGGATGCCGTGCGGCGGCAGGCGGCGCAGTTTGCGCTGCGGACGCTACTGGAAAAATTT
CTTATGTGA

Upstream 100 bases:

>100_bases
TGTTTAATTTTTTTTGAGATCTGATGTCTGGCGATCGGCGATTCGTAGGAGGGAAAGTGTTACTATGCCCGCCGTTCCTT
TATGGGTTTAAGGAGTCACT

Downstream 100 bases:

>100_bases
GTCTTGATGCTGTATGAGTATACAGTATAATCAAGGTCAATTTCAGATTTGCTATGCGTGGAGTAAGCGGATGGACGAGA
ACAAACAACGTGCCCTGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MEQSLTALSQSVGERLRARGAQVTCAESCTGGLIAKLLTDIVGSSYYFERGFVTYSNRAKEEMLGVPGSVLTQHGAVSEP
VVAAMAVGALHAAQADLAMAVSGIAGPDGGSAQKPVGTVWFGFVARGGEPLCLRRNFAGDRDAVRRQAAQFALRTLLEKF
LM

Sequences:

>Translated_162_residues
MEQSLTALSQSVGERLRARGAQVTCAESCTGGLIAKLLTDIVGSSYYFERGFVTYSNRAKEEMLGVPGSVLTQHGAVSEP
VVAAMAVGALHAAQADLAMAVSGIAGPDGGSAQKPVGTVWFGFVARGGEPLCLRRNFAGDRDAVRRQAAQFALRTLLEKF
LM
>Mature_162_residues
MEQSLTALSQSVGERLRARGAQVTCAESCTGGLIAKLLTDIVGSSYYFERGFVTYSNRAKEEMLGVPGSVLTQHGAVSEP
VVAAMAVGALHAAQADLAMAVSGIAGPDGGSAQKPVGTVWFGFVARGGEPLCLRRNFAGDRDAVRRQAAQFALRTLLEKF
LM

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=160, Percent_Identity=63.75, Blast_Score=211, Evalue=2e-56,
Organism=Escherichia coli, GI1787818, Length=149, Percent_Identity=37.5838926174497, Blast_Score=101, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17021; Mature: 17021

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQSLTALSQSVGERLRARGAQVTCAESCTGGLIAKLLTDIVGSSYYFERGFVTYSNRAK
CCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHCCCEECCCHHH
EEMLGVPGSVLTQHGAVSEPVVAAMAVGALHAAQADLAMAVSGIAGPDGGSAQKPVGTVW
HHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
FGFVARGGEPLCLRRNFAGDRDAVRRQAAQFALRTLLEKFLM
HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEQSLTALSQSVGERLRARGAQVTCAESCTGGLIAKLLTDIVGSSYYFERGFVTYSNRAK
CCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHCCCEECCCHHH
EEMLGVPGSVLTQHGAVSEPVVAAMAVGALHAAQADLAMAVSGIAGPDGGSAQKPVGTVW
HHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
FGFVARGGEPLCLRRNFAGDRDAVRRQAAQFALRTLLEKFLM
HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]