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The map label for this gene is rimM [H]

Identifier: 238921087

GI number: 238921087

Start: 3099223

End: 3099777

Strand: Reverse

Name: rimM [H]

Synonym: NT01EI_3222

Alternate gene names: 238921087

Gene position: 3099777-3099223 (Counterclockwise)

Preceding gene: 238921088

Following gene: 238921086

Centisome position: 81.31

GC content: 51.53

Gene sequence:

>555_bases
GTGGTCACGATGAGCACAGAGAATAAGCCGGCGGTGAGTAATGCAGTCGTTCTGGGGAAACTCGGTTCTGCGTATGGCAT
CCGCGGCTGGCTCAGAGTGTTTTCCTCCACCGAGGATGCTGAAAGCATTTTTGATTACCAGCCCTGGTTTATCCAGCAGG
CGGGTAAGTGGGTTGCGATCGAGCTGGAAAGCTGGCGTAGCCACAATCAGGATTGGGTCGTCAAAATTAAAGGTATTGAC
GATCGTGATGCGGCCAATACCATGGTTAATCGAGAGATTGTCGTGGATGAGTCGCAGCTGCCGTCGCTGGATGATGGCGA
TTACTACTGGAAAGACCTGATGGGTTGCCAGGTAGTCACCGTGTCCGGCTATGCGCTGGGTAAAGTCACTGCGATGATGG
AAACCGGCTCCAACGACGTATTGGTCGTGAAGGCGAACCTGAAAGATGCATTCGGTATGAAGGAGCGGTTGATTCCGTTC
CTCGACGGACAGGTGATCAAGAAAGTCGATCTCACTGCTAAATCTATTGAAGTAGATTGGGATCCTGGTTTTTGA

Upstream 100 bases:

>100_bases
TCTGGATCGCGTAAGCCACTGGGTTTCCCAGGGCGCAACCGTTTCTGATCGCGTAGCTGCGCTGATCAAAGAAGCTCAGA
AAGCAGCTTAACCCGTTGCG

Downstream 100 bases:

>100_bases
CCTCCGATATTAACGGTAGAACTGAGTGGAACGCCACGATGTGGATTGGGGTAATTAGTCTGTTTCCCGAGATGTTCCGC
GCAATCACCGATTACGGGGT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MVTMSTENKPAVSNAVVLGKLGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGKWVAIELESWRSHNQDWVVKIKGID
DRDAANTMVNREIVVDESQLPSLDDGDYYWKDLMGCQVVTVSGYALGKVTAMMETGSNDVLVVKANLKDAFGMKERLIPF
LDGQVIKKVDLTAKSIEVDWDPGF

Sequences:

>Translated_184_residues
MVTMSTENKPAVSNAVVLGKLGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGKWVAIELESWRSHNQDWVVKIKGID
DRDAANTMVNREIVVDESQLPSLDDGDYYWKDLMGCQVVTVSGYALGKVTAMMETGSNDVLVVKANLKDAFGMKERLIPF
LDGQVIKKVDLTAKSIEVDWDPGF
>Mature_184_residues
MVTMSTENKPAVSNAVVLGKLGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGKWVAIELESWRSHNQDWVVKIKGID
DRDAANTMVNREIVVDESQLPSLDDGDYYWKDLMGCQVVTVSGYALGKVTAMMETGSNDVLVVKANLKDAFGMKERLIPF
LDGQVIKKVDLTAKSIEVDWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=174, Percent_Identity=78.1609195402299, Blast_Score=296, Evalue=5e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20560; Mature: 20560

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTMSTENKPAVSNAVVLGKLGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGKWVAI
CEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHCCCCCEEECCCCEEEE
ELESWRSHNQDWVVKIKGIDDRDAANTMVNREIVVDESQLPSLDDGDYYWKDLMGCQVVT
EEHHCCCCCCCEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEE
VSGYALGKVTAMMETGSNDVLVVKANLKDAFGMKERLIPFLDGQVIKKVDLTAKSIEVDW
ECCEEHHHEEEEEECCCCCEEEEEECCCCHHCCHHHCCHHCCCCEEEEECCCEEEEEEEC
DPGF
CCCC
>Mature Secondary Structure
MVTMSTENKPAVSNAVVLGKLGSAYGIRGWLRVFSSTEDAESIFDYQPWFIQQAGKWVAI
CEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHHHCCCCCEEECCCCEEEE
ELESWRSHNQDWVVKIKGIDDRDAANTMVNREIVVDESQLPSLDDGDYYWKDLMGCQVVT
EEHHCCCCCCCEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEE
VSGYALGKVTAMMETGSNDVLVVKANLKDAFGMKERLIPFLDGQVIKKVDLTAKSIEVDW
ECCEEHHHEEEEEECCCCCEEEEEECCCCHHCCHHHCCHHCCCCEEEEECCCEEEEEEEC
DPGF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA