Click here to switch to the map view.

The map label for this gene is rseA [H]

Identifier: 238920910

GI number: 238920910

Start: 2926586

End: 2927224

Strand: Reverse

Name: rseA [H]

Synonym: NT01EI_3038

Alternate gene names: 238920910

Gene position: 2927224-2926586 (Counterclockwise)

Preceding gene: 238920911

Following gene: 238920909

Centisome position: 76.78

GC content: 57.59

Gene sequence:

>639_bases
ATGCAGAAAGAAAAACTTTCGGCTCTCATGGATGGTGAATTGCTGGACAGTGAGCTGATGGGCTCCCTGAGCAGTGACCT
TGAGTTGCAACACACCTGGCAGCGTTACCATCTGATCCGTGACACTCTGCGGGGTGACATGGGTGAGACGGTACAGATTG
ATATTACCGATCGAATTGCAGCCGCACTGGACGATGAGCCGGTGTGCCTGGTGCCCGGTGCAATTCCTGAATCTCAGCCA
CAGCCCTCCGCCTGGCAGCGTATGCCGTTCTGGCATAAGGTGCGTCCCTGGCTGGGGCAGATCTCCCAGATGGGGATCGC
CGCCGGGGTTTCGCTGGCGGTCCTGTTGGGGGTTCAGCACTATAACCGTCCCGCAGACGGTGTTTCCGATCCGGAGTCTC
CGGTCTTCAATACCTTGCCGTTGGGTGGTCAGGCATCGCCGGTCAGCTTCGGTGTACCGAATGAAGGTAGCAATGCCCAG
CAGCAGATTCAGCAACAGCGCAAGCGCATCAATGCGATCCTGCAGGATTATGAGCTGCAGCGTCGTCTCCACGCTGAACA
GCTGCAGACCCAGGATAGCAACGTGCAGGCGTCTATCCAGGTGCCCGGTACGCAGTCATTAGGAACTCAGCAGCAGTAA

Upstream 100 bases:

>100_bases
GGTACGTTCACGTATCTTCCGCGCCAGGGAAGCGATCGACAGTAAAGTTCAGCCGCTGATTCAGCGTTAGTCATGCGGAC
ACAGCAAAGGGTATTAAGGC

Downstream 100 bases:

>100_bases
TGAAGCACATTTGGTTTGCTCTTAGTCTGTTGACTGGCAGCCTATTTATCTCCTTTTCCGCTCTGGCCCAGGATACTGCG
CCGGGGCTGATGCTTCAGGA

Product: anti-RNA polymerase sigma factor SigE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MQKEKLSALMDGELLDSELMGSLSSDLELQHTWQRYHLIRDTLRGDMGETVQIDITDRIAAALDDEPVCLVPGAIPESQP
QPSAWQRMPFWHKVRPWLGQISQMGIAAGVSLAVLLGVQHYNRPADGVSDPESPVFNTLPLGGQASPVSFGVPNEGSNAQ
QQIQQQRKRINAILQDYELQRRLHAEQLQTQDSNVQASIQVPGTQSLGTQQQ

Sequences:

>Translated_212_residues
MQKEKLSALMDGELLDSELMGSLSSDLELQHTWQRYHLIRDTLRGDMGETVQIDITDRIAAALDDEPVCLVPGAIPESQP
QPSAWQRMPFWHKVRPWLGQISQMGIAAGVSLAVLLGVQHYNRPADGVSDPESPVFNTLPLGGQASPVSFGVPNEGSNAQ
QQIQQQRKRINAILQDYELQRRLHAEQLQTQDSNVQASIQVPGTQSLGTQQQ
>Mature_212_residues
MQKEKLSALMDGELLDSELMGSLSSDLELQHTWQRYHLIRDTLRGDMGETVQIDITDRIAAALDDEPVCLVPGAIPESQP
QPSAWQRMPFWHKVRPWLGQISQMGIAAGVSLAVLLGVQHYNRPADGVSDPESPVFNTLPLGGQASPVSFGVPNEGSNAQ
QQIQQQRKRINAILQDYELQRRLHAEQLQTQDSNVQASIQVPGTQSLGTQQQ

Specific function: Negative regulator of rpoE [H]

COG id: COG3073

COG function: function code T; Negative regulator of sigma E activity

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rseA family [H]

Homologues:

Organism=Escherichia coli, GI1788925, Length=216, Percent_Identity=60.1851851851852, Blast_Score=241, Evalue=3e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005573
- InterPro:   IPR005572 [H]

Pfam domain/function: PF03873 RseA_C; PF03872 RseA_N [H]

EC number: NA

Molecular weight: Translated: 23454; Mature: 23454

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKEKLSALMDGELLDSELMGSLSSDLELQHTWQRYHLIRDTLRGDMGETVQIDITDRIA
CCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH
AALDDEPVCLVPGAIPESQPQPSAWQRMPFWHKVRPWLGQISQMGIAAGVSLAVLLGVQH
HHCCCCCEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YNRPADGVSDPESPVFNTLPLGGQASPVSFGVPNEGSNAQQQIQQQRKRINAILQDYELQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RRLHAEQLQTQDSNVQASIQVPGTQSLGTQQQ
HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MQKEKLSALMDGELLDSELMGSLSSDLELQHTWQRYHLIRDTLRGDMGETVQIDITDRIA
CCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH
AALDDEPVCLVPGAIPESQPQPSAWQRMPFWHKVRPWLGQISQMGIAAGVSLAVLLGVQH
HHCCCCCEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YNRPADGVSDPESPVFNTLPLGGQASPVSFGVPNEGSNAQQQIQQQRKRINAILQDYELQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RRLHAEQLQTQDSNVQASIQVPGTQSLGTQQQ
HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]