Click here to switch to the map view.

The map label for this gene is ybfM [H]

Identifier: 238920786

GI number: 238920786

Start: 2795663

End: 2797057

Strand: Reverse

Name: ybfM [H]

Synonym: NT01EI_2905

Alternate gene names: 238920786

Gene position: 2797057-2795663 (Counterclockwise)

Preceding gene: 238920787

Following gene: 238920785

Centisome position: 73.37

GC content: 57.13

Gene sequence:

>1395_bases
ATGGTTACGCATCGTGCTAAGCGCAGCGTGCTGGCGCTCGCTGTTGCCGCAGCAACGCTGGGCAGCGGCTTCATGGCGCC
CTCACAGGCGCAGGCTGAAGGGTTCATTGACGATTCAACCATGACCGGTGGGATCTACTACTGGCAGCGCGAGCGCGATC
GCAAGGACGTGGAGACCGGTAAGTATAAAACCAACCTGTCTCACGCCACCTGGAATGCCAGCCTCGACTTCTCCTCCGGC
TACGCCGCCGACTTTATCGGTCTGGACGTTGGCGCATTTACCGCCATTGAGATGGCGGAATCAGCCGGAAGCGGTCACCC
GAACGAAATCGCCTTCTCCTCTTCCAACCGGGCCTATGAGGAAGACTGGCTTGGTGACAAGAGTGGCATCAGTCTGTACA
AGGCGGCAGCCAAGCTGAAAATGGGGCCGATGTGGGCGCGTATCGGCTGGATCCAGCCGACCGGTCAGACCCTGATAGCC
CCGCACTGGAGCTTTATGCCGGGTACTTATCAGGGGTTTGAGACCGGCGCCAACTTTGACTTTGACAGCGCCGGGGCGCT
GAGCTTCTCCTATATGTGGACCGACCGCTATAAGGCGCCATGGCATCTGGAGATGGATAAGTTCTATCAGGGTGGCCTGG
GCGATAACCGCGGTGAAGAGGTCTCCTACCTGCACTCCCTGGGCGGGAAATATGACTTCAAGAACGGCCTGGTGGTGGAG
GCGGCCTTTGGCCAAGCCCAGGGCTTTATGAACCAGTACTTCGCCAAGGGAACCTACAAGTTTGATGTGGCCGGTAGCCC
GCTGACCACCAGTTACCAGTTCTACGGTGCCCATGATCGCATTTCTGATGCCAACAGCAATGCCGATGTCTATGATGGCA
CTGCCTGGCTGCAGGGATTGACTTTCGGTTACAAGGTTGGTCAGTTTGACCTGCGCCTGGAAGGCACCTGGGTGAAGGCT
GAGGGTAAGCAGGGCTACTTCCTGCAGCGTATGACCCCGGCCTACGCCTCTTCCAACGGTCGTTTGGATATCTGGTGGGA
TAACCGCTCCGACTTTAACGCCAACGGTGAGAAAGCGGTCTTTGCCGGGGTGATGTATGACCTGAGCAAGTGGAATATGC
CGGGATGGGGCGTTGGTGCCTCCTATGTCTACGGTTGGGATGCCAAGCCAAACAGTACTTACGCCGACCAGAACAAGCGT
GTGAAAGAGAGCGCCTACAGTCTGGATGCGATGTACGTGATCCAGGATGGCCGTGCCAAGGGCACCCTGTTCAAGCTGCA
CTACACCCAGTATGACAATAAGGCCAAAGATCAGGATCTGGGGGGGTACGGCAACATGTTCCAGGATGAGCATGACGTGA
AGTTTATCGTTATCGCTCCGTTCACCGTGTTCTGA

Upstream 100 bases:

>100_bases
ACCCAGACACCCAATAAATTTTACCCCGATGGGGATATTGGCGACCTGGCCGGACGCTGTTCCGCCAGCCGCGTTTTTTC
AGTCAAAGAGGAATTTTTCT

Downstream 100 bases:

>100_bases
GTTATTGTCCCCTCTGCGCGTGTGGAGGGGCGTTAAGCGAATCAAGGGAGAGAGAGTATGAAAGCGATTCTGGGTGTGGC
CATGGCTGCTATCGTACTGA

Product: outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MVTHRAKRSVLALAVAAATLGSGFMAPSQAQAEGFIDDSTMTGGIYYWQRERDRKDVETGKYKTNLSHATWNASLDFSSG
YAADFIGLDVGAFTAIEMAESAGSGHPNEIAFSSSNRAYEEDWLGDKSGISLYKAAAKLKMGPMWARIGWIQPTGQTLIA
PHWSFMPGTYQGFETGANFDFDSAGALSFSYMWTDRYKAPWHLEMDKFYQGGLGDNRGEEVSYLHSLGGKYDFKNGLVVE
AAFGQAQGFMNQYFAKGTYKFDVAGSPLTTSYQFYGAHDRISDANSNADVYDGTAWLQGLTFGYKVGQFDLRLEGTWVKA
EGKQGYFLQRMTPAYASSNGRLDIWWDNRSDFNANGEKAVFAGVMYDLSKWNMPGWGVGASYVYGWDAKPNSTYADQNKR
VKESAYSLDAMYVIQDGRAKGTLFKLHYTQYDNKAKDQDLGGYGNMFQDEHDVKFIVIAPFTVF

Sequences:

>Translated_464_residues
MVTHRAKRSVLALAVAAATLGSGFMAPSQAQAEGFIDDSTMTGGIYYWQRERDRKDVETGKYKTNLSHATWNASLDFSSG
YAADFIGLDVGAFTAIEMAESAGSGHPNEIAFSSSNRAYEEDWLGDKSGISLYKAAAKLKMGPMWARIGWIQPTGQTLIA
PHWSFMPGTYQGFETGANFDFDSAGALSFSYMWTDRYKAPWHLEMDKFYQGGLGDNRGEEVSYLHSLGGKYDFKNGLVVE
AAFGQAQGFMNQYFAKGTYKFDVAGSPLTTSYQFYGAHDRISDANSNADVYDGTAWLQGLTFGYKVGQFDLRLEGTWVKA
EGKQGYFLQRMTPAYASSNGRLDIWWDNRSDFNANGEKAVFAGVMYDLSKWNMPGWGVGASYVYGWDAKPNSTYADQNKR
VKESAYSLDAMYVIQDGRAKGTLFKLHYTQYDNKAKDQDLGGYGNMFQDEHDVKFIVIAPFTVF
>Mature_464_residues
MVTHRAKRSVLALAVAAATLGSGFMAPSQAQAEGFIDDSTMTGGIYYWQRERDRKDVETGKYKTNLSHATWNASLDFSSG
YAADFIGLDVGAFTAIEMAESAGSGHPNEIAFSSSNRAYEEDWLGDKSGISLYKAAAKLKMGPMWARIGWIQPTGQTLIA
PHWSFMPGTYQGFETGANFDFDSAGALSFSYMWTDRYKAPWHLEMDKFYQGGLGDNRGEEVSYLHSLGGKYDFKNGLVVE
AAFGQAQGFMNQYFAKGTYKFDVAGSPLTTSYQFYGAHDRISDANSNADVYDGTAWLQGLTFGYKVGQFDLRLEGTWVKA
EGKQGYFLQRMTPAYASSNGRLDIWWDNRSDFNANGEKAVFAGVMYDLSKWNMPGWGVGASYVYGWDAKPNSTYADQNKR
VKESAYSLDAMYVIQDGRAKGTLFKLHYTQYDNKAKDQDLGGYGNMFQDEHDVKFIVIAPFTVF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786897, Length=473, Percent_Identity=72.3044397463002, Blast_Score=700, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 51629; Mature: 51629

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTHRAKRSVLALAVAAATLGSGFMAPSQAQAEGFIDDSTMTGGIYYWQRERDRKDVETG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCEEEEECCCCCCCCCCC
KYKTNLSHATWNASLDFSSGYAADFIGLDVGAFTAIEMAESAGSGHPNEIAFSSSNRAYE
CEEECCCEEEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH
EDWLGDKSGISLYKAAAKLKMGPMWARIGWIQPTGQTLIAPHWSFMPGTYQGFETGANFD
HHHCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCC
FDSAGALSFSYMWTDRYKAPWHLEMDKFYQGGLGDNRGEEVSYLHSLGGKYDFKNGLVVE
CCCCCCEEEEEEEECCCCCCEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCEECCCCEEEE
AAFGQAQGFMNQYFAKGTYKFDVAGSPLTTSYQFYGAHDRISDANSNADVYDGTAWLQGL
ECCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEECCHHHHHHC
TFGYKVGQFDLRLEGTWVKAEGKQGYFLQRMTPAYASSNGRLDIWWDNRSDFNANGEKAV
EEEEEECEEEEEEEEEEEEECCCCCEEEEECCHHHCCCCCCEEEEECCCCCCCCCCCEEE
FAGVMYDLSKWNMPGWGVGASYVYGWDAKPNSTYADQNKRVKESAYSLDAMYVIQDGRAK
EEHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCEEEEEEEECCCCC
GTLFKLHYTQYDNKAKDQDLGGYGNMFQDEHDVKFIVIAPFTVF
CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEECC
>Mature Secondary Structure
MVTHRAKRSVLALAVAAATLGSGFMAPSQAQAEGFIDDSTMTGGIYYWQRERDRKDVETG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCEEEEECCCCCCCCCCC
KYKTNLSHATWNASLDFSSGYAADFIGLDVGAFTAIEMAESAGSGHPNEIAFSSSNRAYE
CEEECCCEEEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH
EDWLGDKSGISLYKAAAKLKMGPMWARIGWIQPTGQTLIAPHWSFMPGTYQGFETGANFD
HHHCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCC
FDSAGALSFSYMWTDRYKAPWHLEMDKFYQGGLGDNRGEEVSYLHSLGGKYDFKNGLVVE
CCCCCCEEEEEEEECCCCCCEEEEHHHHHCCCCCCCCCCHHHHHHHCCCCEECCCCEEEE
AAFGQAQGFMNQYFAKGTYKFDVAGSPLTTSYQFYGAHDRISDANSNADVYDGTAWLQGL
ECCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEECCHHHHHHC
TFGYKVGQFDLRLEGTWVKAEGKQGYFLQRMTPAYASSNGRLDIWWDNRSDFNANGEKAV
EEEEEECEEEEEEEEEEEEECCCCCEEEEECCHHHCCCCCCEEEEECCCCCCCCCCCEEE
FAGVMYDLSKWNMPGWGVGASYVYGWDAKPNSTYADQNKRVKESAYSLDAMYVIQDGRAK
EEHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCEEEEEEEECCCCC
GTLFKLHYTQYDNKAKDQDLGGYGNMFQDEHDVKFIVIAPFTVF
CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]