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The map label for this gene is echR [H]

Identifier: 238920760

GI number: 238920760

Start: 2767838

End: 2768557

Strand: Direct

Name: echR [H]

Synonym: NT01EI_2880

Alternate gene names: 238920760

Gene position: 2767838-2768557 (Clockwise)

Preceding gene: 238920758

Following gene: 238920762

Centisome position: 72.6

GC content: 44.03

Gene sequence:

>720_bases
GTGTTTGCTGATAATGAGAGTCTGACAAGAGAAATCAAGCAATTTATCGATCGGTCACTGGTCGCTTACGGCCACATTCA
ATTTGCTTATTTATTGCTCAACAAAAAAAATCCATCGGATATTATTATCATCTCCAATTATCCAGATGAATGGGTAACGC
TATATAAAGAGCACCATTATCAGCATATCGATCCAGTAGTGATCTCCGCCCTACGTCGGGTATCGCCCTTCCTGTGGGAT
GAAAAAATCACCGTCAACTCGCAGCTTAACCTCTCAAAAATTTTTAATCTTTCCAAGAAATACCAGGTGAGCAGAGGCTA
TACCTTTGTACTGCATGACGCAGATAATCAGCTGGCAATGCTTTCACTGATGGTCGACGATCGCGGGCTGGCGGAAATTG
AGCGGAACAGAGGCGTCCTACAAATGTTGCTGATCGATGCCCATGAGCGCTTTATAAACGGCCAGCGCCAAATTACCGCA
CAGCGCCATTGCAGTAACAAAGAGCCTATAGAGAATATTTTCTCCACTCGTGAGAATGAAATTCTTTACTGGGCCAGTAT
GGGGAAAACATACCAAGAAATCGCACTGATCCTAGGTATTAAAACTGGCACAGTCAAATTTCACATTGGTAATGTTGTCA
AAAAGCTGGGGGTATTAAACGCCAAGCACGCAATCCGGCTTGGCGTTGAACTGCAGCTGATTAAGCCGATTGAAGGTTGA

Upstream 100 bases:

>100_bases
TGTAAAACTCCCGTTGACACGTAAGATAAGGGATGTAATTAGCAACGGAACGTATTACTGTATACTTTTCGCGATAAGGT
GATTGGGAGAAAAAACGAGC

Downstream 100 bases:

>100_bases
GCGCATCGGCGGATTTCAGTACCATGGGCCAACTCTGCAGAGCCTCCTCATCAAAAGGCTGATCCTGATTAATCCGCTCG
ATCAGCAGACGCTGATTAGC

Product: AHL-dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MFADNESLTREIKQFIDRSLVAYGHIQFAYLLLNKKNPSDIIIISNYPDEWVTLYKEHHYQHIDPVVISALRRVSPFLWD
EKITVNSQLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAMLSLMVDDRGLAEIERNRGVLQMLLIDAHERFINGQRQITA
QRHCSNKEPIENIFSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLIKPIEG

Sequences:

>Translated_239_residues
MFADNESLTREIKQFIDRSLVAYGHIQFAYLLLNKKNPSDIIIISNYPDEWVTLYKEHHYQHIDPVVISALRRVSPFLWD
EKITVNSQLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAMLSLMVDDRGLAEIERNRGVLQMLLIDAHERFINGQRQITA
QRHCSNKEPIENIFSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLIKPIEG
>Mature_239_residues
MFADNESLTREIKQFIDRSLVAYGHIQFAYLLLNKKNPSDIIIISNYPDEWVTLYKEHHYQHIDPVVISALRRVSPFLWD
EKITVNSQLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAMLSLMVDDRGLAEIERNRGVLQMLLIDAHERFINGQRQITA
QRHCSNKEPIENIFSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLIKPIEG

Specific function: Functions as a potential ohlL-responsive transcriptional regulator [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=204, Percent_Identity=27.4509803921569, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27588; Mature: 27588

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFADNESLTREIKQFIDRSLVAYGHIQFAYLLLNKKNPSDIIIISNYPDEWVTLYKEHHY
CCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEECCCCHHHHHHHHHHCC
QHIDPVVISALRRVSPFLWDEKITVNSQLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAM
CCCCHHHHHHHHHHCHHHCCCEEEECCCCCHHHHHCCHHHEEECCCEEEEEECCCCCEEE
LSLMVDDRGLAEIERNRGVLQMLLIDAHERFINGQRQITAQRHCSNKEPIENIFSTRENE
EEEEECCCCHHHHHHCCCCEEHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHCCCCCC
ILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLIKPIEG
EEEEECCCCHHHHEEEHEEEECCEEEEEHHHHHHHHHCCCCCCEEEECEEEEEECCCCC
>Mature Secondary Structure
MFADNESLTREIKQFIDRSLVAYGHIQFAYLLLNKKNPSDIIIISNYPDEWVTLYKEHHY
CCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEEEECCCCHHHHHHHHHHCC
QHIDPVVISALRRVSPFLWDEKITVNSQLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAM
CCCCHHHHHHHHHHCHHHCCCEEEECCCCCHHHHHCCHHHEEECCCEEEEEECCCCCEEE
LSLMVDDRGLAEIERNRGVLQMLLIDAHERFINGQRQITAQRHCSNKEPIENIFSTRENE
EEEEECCCCHHHHHHCCCCEEHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHCCCCCC
ILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLIKPIEG
EEEEECCCCHHHHEEEHEEEECCEEEEEHHHHHHHHHCCCCCCEEEECEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA