| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920762
Identifier: 238920762
GI number: 238920762
Start: 2769913
End: 2771088
Strand: Direct
Name: 238920762
Synonym: NT01EI_2881
Alternate gene names: NA
Gene position: 2769913-2771088 (Clockwise)
Preceding gene: 238920760
Following gene: 238920769
Centisome position: 72.66
GC content: 47.96
Gene sequence:
>1176_bases ATGCCTGCTCGTCAGGTATGTCAGAATTTTTTCCGTGATGTGTTAGCACCTTTTCATAAATACCGACAAAATGCCTTGCT GGATGCTACCGTTGCACTCATTAGCGGTGCGTCACTGACGTTGACCAGCATCGGGCGCCATTTACCCGGATCGGCTCAGG TCAAAAATAAAATCAAACGTGTTGATCGCCTGCTGGGTAATGAGTCACTGCATCTGGATATTCCTCTGATTTTTAAAAGT ATTATCTCGATGCTGACGGGGCAGTTGTCTCTTTGCGTTATTGCTGTTGACTGGAGTGGCTACCCGTCTCAGGAGCATCA TGTTCTTCGCGCCTGTCTCCTGTGCGACGGGCGTTCACTCCCCTTGTTAAGCTGGATAGTTCCGTCAGAAAAACAGCAGA ACTCACAGAGACAAAAAGCCTTCCTTGATGCTCTTGCAGAGGCAGTAAACTCGCAGGCCAGAGTCATCATTGTTACCGAC GCAGGCTTCCAGAATGCCTGGTTCAGGCATATCAAGTCACTCGGTTGGGACTTTATTGGGCGAATAAGAGGAACGGTAAA GTTCAGGCTGCTAAAAACAGGTGAATACTGGTATCACGTGAGTGATATCAAGGCGGAAAGGCATCCACCCATCAAAGCCA GTTCGCGCCCGGTATATCTTGGGGTCGGAACTCTGGGATGCACTGAATACGCTCGTTGCGATGGTCATTTTTATCTTCAC AAGAAGCCATCCTGCGGACGTAAAAATAAGCATTCCCGATGCCGCATCTATCGTAAGTCACAGGTGCGGGATGCCCGCAG GGCCGCAAAAGAACCCTGGCTTATCTTCAGCAGTACAGATGATTTTAAGCCAAGAGAAATCATGAAGTTATACAGTCGCA GAATGCAAATTGAGCAGAACTTCAGGGATGAAAAAAGTGAGCACTTCGGGTGCGGACTTCGTGCCAGCTACAGCCGTTCA ATCGGGCGTATGCTGGTTCTGAGTTTACTGGCAACGTTGAGTACCATCGTAATGTGGTTGCTCGGCTATCACGCTGAAAA CAAAGGATTACATTTGAGGTATCAGGCCAACAGCATTAAATCACGGCGTGTTATCTCATATCTTACTTTAGCGGAGAATG TCTTACGACACTCCCCCGCTAATCTTAAAAAGAACGGTACTCAGCACCGTTCTTAA
Upstream 100 bases:
>100_bases TATGTGCTGAGGGATCCCCAGCAATAGGCGGGTAAAAAAAGACAGGCATAGAGTTTTGTGATCTACTGATTTGTGCAACC AATTCAAGGAGATCACCTCT
Downstream 100 bases:
>100_bases TCACCTCGTCAGAACCTACCAAAATATGGTGCTGGTTTATTAGCACTGATTTATGGGGATCCCTCAGCCGCTATGCGGGG TTGGCGATATCGATAAAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Transposase; ISxac1 Transposase; Transposase For IS; IS10 Orf; ISCro2 Transposase; Transposase IS; IS4 Family Transposase; ISSfl3 ORF
Number of amino acids: Translated: 391; Mature: 390
Protein sequence:
>391_residues MPARQVCQNFFRDVLAPFHKYRQNALLDATVALISGASLTLTSIGRHLPGSAQVKNKIKRVDRLLGNESLHLDIPLIFKS IISMLTGQLSLCVIAVDWSGYPSQEHHVLRACLLCDGRSLPLLSWIVPSEKQQNSQRQKAFLDALAEAVNSQARVIIVTD AGFQNAWFRHIKSLGWDFIGRIRGTVKFRLLKTGEYWYHVSDIKAERHPPIKASSRPVYLGVGTLGCTEYARCDGHFYLH KKPSCGRKNKHSRCRIYRKSQVRDARRAAKEPWLIFSSTDDFKPREIMKLYSRRMQIEQNFRDEKSEHFGCGLRASYSRS IGRMLVLSLLATLSTIVMWLLGYHAENKGLHLRYQANSIKSRRVISYLTLAENVLRHSPANLKKNGTQHRS
Sequences:
>Translated_391_residues MPARQVCQNFFRDVLAPFHKYRQNALLDATVALISGASLTLTSIGRHLPGSAQVKNKIKRVDRLLGNESLHLDIPLIFKS IISMLTGQLSLCVIAVDWSGYPSQEHHVLRACLLCDGRSLPLLSWIVPSEKQQNSQRQKAFLDALAEAVNSQARVIIVTD AGFQNAWFRHIKSLGWDFIGRIRGTVKFRLLKTGEYWYHVSDIKAERHPPIKASSRPVYLGVGTLGCTEYARCDGHFYLH KKPSCGRKNKHSRCRIYRKSQVRDARRAAKEPWLIFSSTDDFKPREIMKLYSRRMQIEQNFRDEKSEHFGCGLRASYSRS IGRMLVLSLLATLSTIVMWLLGYHAENKGLHLRYQANSIKSRRVISYLTLAENVLRHSPANLKKNGTQHRS >Mature_390_residues PARQVCQNFFRDVLAPFHKYRQNALLDATVALISGASLTLTSIGRHLPGSAQVKNKIKRVDRLLGNESLHLDIPLIFKSI ISMLTGQLSLCVIAVDWSGYPSQEHHVLRACLLCDGRSLPLLSWIVPSEKQQNSQRQKAFLDALAEAVNSQARVIIVTDA GFQNAWFRHIKSLGWDFIGRIRGTVKFRLLKTGEYWYHVSDIKAERHPPIKASSRPVYLGVGTLGCTEYARCDGHFYLHK KPSCGRKNKHSRCRIYRKSQVRDARRAAKEPWLIFSSTDDFKPREIMKLYSRRMQIEQNFRDEKSEHFGCGLRASYSRSI GRMLVLSLLATLSTIVMWLLGYHAENKGLHLRYQANSIKSRRVISYLTLAENVLRHSPANLKKNGTQHRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44652; Mature: 44521
Theoretical pI: Translated: 10.70; Mature: 10.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPARQVCQNFFRDVLAPFHKYRQNALLDATVALISGASLTLTSIGRHLPGSAQVKNKIKR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCHHHHHHHHHH VDRLLGNESLHLDIPLIFKSIISMLTGQLSLCVIAVDWSGYPSQEHHVLRACLLCDGRSL HHHHHCCCCEEEEHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCC PLLSWIVPSEKQQNSQRQKAFLDALAEAVNSQARVIIVTDAGFQNAWFRHIKSLGWDFIG CEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCHHHHH RIRGTVKFRLLKTGEYWYHVSDIKAERHPPIKASSRPVYLGVGTLGCTEYARCDGHFYLH HHCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCEEEEE KKPSCGRKNKHSRCRIYRKSQVRDARRAAKEPWLIFSSTDDFKPREIMKLYSRRMQIEQN CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH FRDEKSEHFGCGLRASYSRSIGRMLVLSLLATLSTIVMWLLGYHAENKGLHLRYQANSIK HHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC SRRVISYLTLAENVLRHSPANLKKNGTQHRS HHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC >Mature Secondary Structure PARQVCQNFFRDVLAPFHKYRQNALLDATVALISGASLTLTSIGRHLPGSAQVKNKIKR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCHHHHHHHHHH VDRLLGNESLHLDIPLIFKSIISMLTGQLSLCVIAVDWSGYPSQEHHVLRACLLCDGRSL HHHHHCCCCEEEEHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCC PLLSWIVPSEKQQNSQRQKAFLDALAEAVNSQARVIIVTDAGFQNAWFRHIKSLGWDFIG CEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCHHHHH RIRGTVKFRLLKTGEYWYHVSDIKAERHPPIKASSRPVYLGVGTLGCTEYARCDGHFYLH HHCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCEEEEE KKPSCGRKNKHSRCRIYRKSQVRDARRAAKEPWLIFSSTDDFKPREIMKLYSRRMQIEQN CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH FRDEKSEHFGCGLRASYSRSIGRMLVLSLLATLSTIVMWLLGYHAENKGLHLRYQANSIK HHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC SRRVISYLTLAENVLRHSPANLKKNGTQHRS HHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA