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The map label for this gene is sdhC [H]

Identifier: 238920753

GI number: 238920753

Start: 2762517

End: 2762906

Strand: Reverse

Name: sdhC [H]

Synonym: NT01EI_2872

Alternate gene names: 238920753

Gene position: 2762906-2762517 (Counterclockwise)

Preceding gene: 238920754

Following gene: 238920752

Centisome position: 72.47

GC content: 56.92

Gene sequence:

>390_bases
GTGGGCAAAAATGTGAAAAAACAAAGACCTGTCAATCTGGATTTGCCAACAATTCGCTTTCCTATCACTGCGATTGCGTC
AATCTTACACCGTGTCAGCGGCGTCGCCGTCTTTATCGCCATCGGTATTCTACTGTGGCTGCTCGGGCTCTCCCTCTCTT
CTGCCGGCGGGTTTGCACAGGCCGCGGCGCTGCTTGACAGCGCGCTGGCCAAGCTGGTGCTGTGGGGTATCCTGACGGCG
CTGGCCTATCACATCTGCGGTGGGATACGTCATCTGCTCATGGACTTTGGTTATCTTGAGGAGAGCTTTAGCGTAGGATG
CCGTTCGGCGCAGCTGGCGTTTGCCGCGACCGTGCTGCTCTCCGTCTGTGCGGGGGTATGGGTATGGTAA

Upstream 100 bases:

>100_bases
GCAGCCCCGGTTGTCGCCGATCCGCTGCCTCAGTCTCGTGGGATTTGCGCCACTGCTTGATACCGTCCCAGGCCCGGAGG
AGGAAAATAATAAGAGTTAT

Downstream 100 bases:

>100_bases
GCAACGCATCGGCGCTGGGGCGCAACGGTATTCAGGATTGGCTGCTGCTGCGTGCATCCGCCATCGTCATCACGCTGTAC
GTTATCTATCTGCTGGCTTT

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MGKNVKKQRPVNLDLPTIRFPITAIASILHRVSGVAVFIAIGILLWLLGLSLSSAGGFAQAAALLDSALAKLVLWGILTA
LAYHICGGIRHLLMDFGYLEESFSVGCRSAQLAFAATVLLSVCAGVWVW

Sequences:

>Translated_129_residues
MGKNVKKQRPVNLDLPTIRFPITAIASILHRVSGVAVFIAIGILLWLLGLSLSSAGGFAQAAALLDSALAKLVLWGILTA
LAYHICGGIRHLLMDFGYLEESFSVGCRSAQLAFAATVLLSVCAGVWVW
>Mature_128_residues
GKNVKKQRPVNLDLPTIRFPITAIASILHRVSGVAVFIAIGILLWLLGLSLSSAGGFAQAAALLDSALAKLVLWGILTAL
AYHICGGIRHLLMDFGYLEESFSVGCRSAQLAFAATVLLSVCAGVWVW

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=129, Percent_Identity=69.7674418604651, Blast_Score=189, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13708; Mature: 13576

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKNVKKQRPVNLDLPTIRFPITAIASILHRVSGVAVFIAIGILLWLLGLSLSSAGGFAQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AAALLDSALAKLVLWGILTALAYHICGGIRHLLMDFGYLEESFSVGCRSAQLAFAATVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SVCAGVWVW
HHHHHHCCC
>Mature Secondary Structure 
GKNVKKQRPVNLDLPTIRFPITAIASILHRVSGVAVFIAIGILLWLLGLSLSSAGGFAQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AAALLDSALAKLVLWGILTALAYHICGGIRHLLMDFGYLEESFSVGCRSAQLAFAATVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SVCAGVWVW
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]