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The map label for this gene is sdhD [H]

Identifier: 238920752

GI number: 238920752

Start: 2762176

End: 2762523

Strand: Reverse

Name: sdhD [H]

Synonym: NT01EI_2871

Alternate gene names: 238920752

Gene position: 2762523-2762176 (Counterclockwise)

Preceding gene: 238920753

Following gene: 238920751

Centisome position: 72.46

GC content: 54.89

Gene sequence:

>348_bases
ATGGTAAGCAACGCATCGGCGCTGGGGCGCAACGGTATTCAGGATTGGCTGCTGCTGCGTGCATCCGCCATCGTCATCAC
GCTGTACGTTATCTATCTGCTGGCTTTTGTGGTCGGCGCAGGCCCACTCAACTATACATTGTGGCTTGACTTCTTCTCTT
CGCGGATCACCCAGGTGTTTACCCTGCTGACCTTGCTGTGCATCCTGATCCATGCCTGGATAGGGATGTGGCAGGTATTG
ACCGACTATGTCAAGCCGCTGGCGTTGCGCCTGGTGCTACAGCTGGCGATCGTGGTGGTCCTGGTGGTCTATCTGATTTA
TGGAACATTGGTTGTGTGGGGGATATAG

Upstream 100 bases:

>100_bases
ACTTTGGTTATCTTGAGGAGAGCTTTAGCGTAGGATGCCGTTCGGCGCAGCTGGCGTTTGCCGCGACCGTGCTGCTCTCC
GTCTGTGCGGGGGTATGGGT

Downstream 100 bases:

>100_bases
ATGAAGCTGCCAGTCAGAGAGTTTGACGCCGTTGTGATCGGCGCCGGTGGTGCAGGGATGCGTGCGGCGCTGCAGATTTC
TCAGGCAGGATTTCGCTGCG

Product: succinate dehydrogenase, hydrophobic membrane anchor protein

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MVSNASALGRNGIQDWLLLRASAIVITLYVIYLLAFVVGAGPLNYTLWLDFFSSRITQVFTLLTLLCILIHAWIGMWQVL
TDYVKPLALRLVLQLAIVVVLVVYLIYGTLVVWGI

Sequences:

>Translated_115_residues
MVSNASALGRNGIQDWLLLRASAIVITLYVIYLLAFVVGAGPLNYTLWLDFFSSRITQVFTLLTLLCILIHAWIGMWQVL
TDYVKPLALRLVLQLAIVVVLVVYLIYGTLVVWGI
>Mature_115_residues
MVSNASALGRNGIQDWLLLRASAIVITLYVIYLLAFVVGAGPLNYTLWLDFFSSRITQVFTLLTLLCILIHAWIGMWQVL
TDYVKPLALRLVLQLAIVVVLVVYLIYGTLVVWGI

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=115, Percent_Identity=69.5652173913043, Blast_Score=145, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 12896; Mature: 12896

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSNASALGRNGIQDWLLLRASAIVITLYVIYLLAFVVGAGPLNYTLWLDFFSSRITQVF
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TLLTLLCILIHAWIGMWQVLTDYVKPLALRLVLQLAIVVVLVVYLIYGTLVVWGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVSNASALGRNGIQDWLLLRASAIVITLYVIYLLAFVVGAGPLNYTLWLDFFSSRITQVF
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TLLTLLCILIHAWIGMWQVLTDYVKPLALRLVLQLAIVVVLVVYLIYGTLVVWGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]