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The map label for this gene is agaD [H]

Identifier: 238920700

GI number: 238920700

Start: 2704271

End: 2705161

Strand: Reverse

Name: agaD [H]

Synonym: NT01EI_2813

Alternate gene names: 238920700

Gene position: 2705161-2704271 (Counterclockwise)

Preceding gene: 238920701

Following gene: 238920699

Centisome position: 70.96

GC content: 57.46

Gene sequence:

>891_bases
ATGGCATCTGAAGTCATTATCTCTCCGGCGCAGGAAGAAACGCGTAAGGCCGCCAGCCTGGTGGACAACGTGGATGCTTA
TCAGGATGGTGAAGTCCGCAAGGTGATCACCAAGAAGGATCTGTGGAAGTGCGCGTTCCGCGGGCTGTTCATGGAAGGTA
ACTTCAACTTCGAACGTATGCAGGGCGGTGGCTTTGCCTACTCGATGATCCCGGCCCTGAAGAAGATCCACGGTAATAAC
CGCGCGGATCTGGCTAAGTCGCTGAAGAACCATCTGCAATTCTTTAACGCCAGTCCGAAACTGTTCACCTTCCTGCTGGG
CACCGCCATCGCGATGGAAGAGAACAAGGAGAAGCCGTCGACCATCAACGTGATGAAGGTAGCGGGCATGGGCCCGACCG
GCGGGATCGGCGATGCCATCGACCATATGACGTTGATGCCGTTGACGCTGGCGCTGGGGGCTTCCATCGCCATCGATGGC
TCCATCGCGGGTCCGTTCGTGTTCTTTATCCTGTATCAGATCGTCCACTTCCTGGTCTACTTCGGCCTGATGTTCATGGG
CTATCGCGCCGGTACGGCGGCGATGGTGAGCATGAGCGATGCCACCGAGAAGTTGGCGCGCGCCGCCAACATCATGGGTA
TCTTCGTCATCGGGGCGTTGTGCGCCACCTTTATCCGCTTCAGTACCACGGCCTCGATAGAGTTGGGCGGCAAGACGGTG
GATCTCCAGAGCGCCTTGTTCGACAAGATCATGCCAAACATGCTGCCGTTGCTGTTGGTCTTCTTTATGTTCCGCATGGT
GAAGGGAACCGGCTTCTGGGCTAAGCCTCCGGTGCTGATCTTCTCGACCTTGGCGGCCGGCGTCGTCGGCCACCTGATGG
GTCTTCTGTAA

Upstream 100 bases:

>100_bases
ATGGCCGTGGCTATCCTCGGCGCGTCTATCGCCGTGTTGTACTACTTCTTCAGCGGTAATAAGTCCAATTCACAGCAGCA
GGTTAAAGAGGAATTCGAAG

Downstream 100 bases:

>100_bases
TCGTCGCTCCCCGCGCCATCATCGATGGGCGGGGAGTTTACCAATGAGTCAGTTGTAAGGGTTATTCCATGATTGGTCTT
GTCATTTCCGGGCACATCCA

Product: N-acetylgalactosamine permease iid component

Products: NA

Alternate protein names: EIID-Aga; PTS system N-acetylgalactosamine-specific EIID component [H]

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MASEVIISPAQEETRKAASLVDNVDAYQDGEVRKVITKKDLWKCAFRGLFMEGNFNFERMQGGGFAYSMIPALKKIHGNN
RADLAKSLKNHLQFFNASPKLFTFLLGTAIAMEENKEKPSTINVMKVAGMGPTGGIGDAIDHMTLMPLTLALGASIAIDG
SIAGPFVFFILYQIVHFLVYFGLMFMGYRAGTAAMVSMSDATEKLARAANIMGIFVIGALCATFIRFSTTASIELGGKTV
DLQSALFDKIMPNMLPLLLVFFMFRMVKGTGFWAKPPVLIFSTLAAGVVGHLMGLL

Sequences:

>Translated_296_residues
MASEVIISPAQEETRKAASLVDNVDAYQDGEVRKVITKKDLWKCAFRGLFMEGNFNFERMQGGGFAYSMIPALKKIHGNN
RADLAKSLKNHLQFFNASPKLFTFLLGTAIAMEENKEKPSTINVMKVAGMGPTGGIGDAIDHMTLMPLTLALGASIAIDG
SIAGPFVFFILYQIVHFLVYFGLMFMGYRAGTAAMVSMSDATEKLARAANIMGIFVIGALCATFIRFSTTASIELGGKTV
DLQSALFDKIMPNMLPLLLVFFMFRMVKGTGFWAKPPVLIFSTLAAGVVGHLMGLL
>Mature_295_residues
ASEVIISPAQEETRKAASLVDNVDAYQDGEVRKVITKKDLWKCAFRGLFMEGNFNFERMQGGGFAYSMIPALKKIHGNNR
ADLAKSLKNHLQFFNASPKLFTFLLGTAIAMEENKEKPSTINVMKVAGMGPTGGIGDAIDHMTLMPLTLALGASIAIDGS
IAGPFVFFILYQIVHFLVYFGLMFMGYRAGTAAMVSMSDATEKLARAANIMGIFVIGALCATFIRFSTTASIELGGKTVD
LQSALFDKIMPNMLPLLLVFFMFRMVKGTGFWAKPPVLIFSTLAAGVVGHLMGLL

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3716

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIID domain [H]

Homologues:

Organism=Escherichia coli, GI1789529, Length=265, Percent_Identity=38.1132075471698, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1788122, Length=283, Percent_Identity=32.5088339222615, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004704
- InterPro:   IPR018405 [H]

Pfam domain/function: PF03613 EIID-AGA [H]

EC number: NA

Molecular weight: Translated: 32151; Mature: 32019

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS51108 PTS_EIID

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASEVIISPAQEETRKAASLVDNVDAYQDGEVRKVITKKDLWKCAFRGLFMEGNFNFERM
CCCCCEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCEEEECCCCCEEE
QGGGFAYSMIPALKKIHGNNRADLAKSLKNHLQFFNASPKLFTFLLGTAIAMEENKEKPS
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
TINVMKVAGMGPTGGIGDAIDHMTLMPLTLALGASIAIDGSIAGPFVFFILYQIVHFLVY
EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHH
FGLMFMGYRAGTAAMVSMSDATEKLARAANIMGIFVIGALCATFIRFSTTASIELGGKTV
HHHHHHHHCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEE
DLQSALFDKIMPNMLPLLLVFFMFRMVKGTGFWAKPPVLIFSTLAAGVVGHLMGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASEVIISPAQEETRKAASLVDNVDAYQDGEVRKVITKKDLWKCAFRGLFMEGNFNFERM
CCCCEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCEEEECCCCCEEE
QGGGFAYSMIPALKKIHGNNRADLAKSLKNHLQFFNASPKLFTFLLGTAIAMEENKEKPS
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
TINVMKVAGMGPTGGIGDAIDHMTLMPLTLALGASIAIDGSIAGPFVFFILYQIVHFLVY
EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHH
FGLMFMGYRAGTAAMVSMSDATEKLARAANIMGIFVIGALCATFIRFSTTASIELGGKTV
HHHHHHHHCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEE
DLQSALFDKIMPNMLPLLLVFFMFRMVKGTGFWAKPPVLIFSTLAAGVVGHLMGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10931310; 9278503; 8932697 [H]