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The map label for this gene is ydeM [H]

Identifier: 238920695

GI number: 238920695

Start: 2699983

End: 2701176

Strand: Reverse

Name: ydeM [H]

Synonym: NT01EI_2808

Alternate gene names: 238920695

Gene position: 2701176-2699983 (Counterclockwise)

Preceding gene: 238920696

Following gene: 238920694

Centisome position: 70.85

GC content: 60.89

Gene sequence:

>1194_bases
ATGATGGCCAAGCCGGCAAGCTATCGCTGCAATTTGCGCTGTAGCTACTGCTTCTATCTGGAAAAAGAGGAGGTGGTGCC
GCAGCAGGCCGGCGCGCGCTCGGCGGAAACCATGAGCGATACGACGCTGCGACGCTATGTGCGTGACTATATTCAGTCCC
ACGCAGGGGAGCAGGTGGACTTTGCCTGGCAGGGCGGCGAGCCAATGCTGGCCGGCCTGCCGTTTTATCAGAAGGCGGTG
GAGTATCAGAAGAAATATGCCGATGGCAAGATCATCACCAATAGCTTTCAGACCAATGGGATCGCCATCAATAGCCAGTG
GGCTGACTTCTTTGCCGGGAGCGGGTTTCTGATCGGCGTTTCGGTGGATGGACTGGCCGCCGTGCACAACCGCTACCGTA
TCGCCGCGCAGGGGCAGCCCACGTTTGATCGCGTCTGCCGCGCCATCGAAACGCTGCGCAGCCATCAGGTCGAGTTCAAT
ACCCTGACGGTGGTGAACGATCAGAACTGGGATAAGGGGCGTCAGACCTATGAGGCGCTCAAGGCGCTGGGTTCGACCTT
TATGCAGTTTATTCCGCTGGTGGAGGTGGACGCCGCCTGCGGCTGTGGCCATGGCCATCACTATTCACCGCCCGCCTCGC
CACAGATGGCACCCTTTAGCGTCCCGGCCCATGGGTACGGCGCGTTTATGGCCGATGTCTTCGATGCCTGGGTAGCACAT
GACGTCGGGCGCTACTACGTGCGTGAGTTCGACAGCCTGCTCGGGGTATGGATGGGCTATCCGGCCTCGACCTGCGTTCA
GTCGGCCACCTGTGGCCAGGCGCTGATCATTGAAGCCAGCGGCGACGTCTACAGCTGCGACCACTTTGTCTACCCGGCCA
ACCGCCTGGGCAACGTTGCCGATACCTCGCTGGCGACGTTGGCGACGTCGGCGCGCCAGCAGCGCTTTGGCCAGGCGAAA
CAGGATCGGCTCACGACGCGCTGCCAGCAGTGTCCGGTGCGTCAATTGTGTCAGGGAGGCTGTCCAAAACACCGCATTAT
GGGGCTACCCGACGAGCGTCACCGGCACAACTATCTGTGCCCGTCCTATCTGCATTTTTTTACCCACACCGCCCAGGCAA
TGCAGATGATGCAGGCGGTGATCCGGCGCGGGGGTGTAGCGGCGGATGTGATGTCTTTAGGGCGTGTCCCGTAA

Upstream 100 bases:

>100_bases
GCATCACTTATTTTCTTTATCTTTCGTAAAATAAGAAACATCGTTTTAAATAAGAGTCTCTCCCATGTCGCGTTCTTCGT
CACAGCAAGCCCACTTTCAT

Downstream 100 bases:

>100_bases
CAGGCCGTGAGCGTCGCTGGTGGTTATTTTAGCCTTGGGCTGGGCTGGGCGCGAGCAGCGAGGTTGGGTGGGCCAAATGC
ACCGTGAGTAACGCTGTACT

Product: chondroitin sulfate/heparin utilization regulation protein

Products: NA

Alternate protein names: AnSME homolog [H]

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MMAKPASYRCNLRCSYCFYLEKEEVVPQQAGARSAETMSDTTLRRYVRDYIQSHAGEQVDFAWQGGEPMLAGLPFYQKAV
EYQKKYADGKIITNSFQTNGIAINSQWADFFAGSGFLIGVSVDGLAAVHNRYRIAAQGQPTFDRVCRAIETLRSHQVEFN
TLTVVNDQNWDKGRQTYEALKALGSTFMQFIPLVEVDAACGCGHGHHYSPPASPQMAPFSVPAHGYGAFMADVFDAWVAH
DVGRYYVREFDSLLGVWMGYPASTCVQSATCGQALIIEASGDVYSCDHFVYPANRLGNVADTSLATLATSARQQRFGQAK
QDRLTTRCQQCPVRQLCQGGCPKHRIMGLPDERHRHNYLCPSYLHFFTHTAQAMQMMQAVIRRGGVAADVMSLGRVP

Sequences:

>Translated_397_residues
MMAKPASYRCNLRCSYCFYLEKEEVVPQQAGARSAETMSDTTLRRYVRDYIQSHAGEQVDFAWQGGEPMLAGLPFYQKAV
EYQKKYADGKIITNSFQTNGIAINSQWADFFAGSGFLIGVSVDGLAAVHNRYRIAAQGQPTFDRVCRAIETLRSHQVEFN
TLTVVNDQNWDKGRQTYEALKALGSTFMQFIPLVEVDAACGCGHGHHYSPPASPQMAPFSVPAHGYGAFMADVFDAWVAH
DVGRYYVREFDSLLGVWMGYPASTCVQSATCGQALIIEASGDVYSCDHFVYPANRLGNVADTSLATLATSARQQRFGQAK
QDRLTTRCQQCPVRQLCQGGCPKHRIMGLPDERHRHNYLCPSYLHFFTHTAQAMQMMQAVIRRGGVAADVMSLGRVP
>Mature_397_residues
MMAKPASYRCNLRCSYCFYLEKEEVVPQQAGARSAETMSDTTLRRYVRDYIQSHAGEQVDFAWQGGEPMLAGLPFYQKAV
EYQKKYADGKIITNSFQTNGIAINSQWADFFAGSGFLIGVSVDGLAAVHNRYRIAAQGQPTFDRVCRAIETLRSHQVEFN
TLTVVNDQNWDKGRQTYEALKALGSTFMQFIPLVEVDAACGCGHGHHYSPPASPQMAPFSVPAHGYGAFMADVFDAWVAH
DVGRYYVREFDSLLGVWMGYPASTCVQSATCGQALIIEASGDVYSCDHFVYPANRLGNVADTSLATLATSARQQRFGQAK
QDRLTTRCQQCPVRQLCQGGCPKHRIMGLPDERHRHNYLCPSYLHFFTHTAQAMQMMQAVIRRGGVAADVMSLGRVP

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=395, Percent_Identity=39.2405063291139, Blast_Score=322, Evalue=3e-89,
Organism=Escherichia coli, GI48994973, Length=395, Percent_Identity=39.4936708860759, Blast_Score=310, Evalue=9e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 44126; Mature: 44126

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAKPASYRCNLRCSYCFYLEKEEVVPQQAGARSAETMSDTTLRRYVRDYIQSHAGEQVD
CCCCCCCCEECEEEEEEEEECHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
FAWQGGEPMLAGLPFYQKAVEYQKKYADGKIITNSFQTNGIAINSQWADFFAGSGFLIGV
EEECCCCCCEECCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCHHHHHCCCCEEEEE
SVDGLAAVHNRYRIAAQGQPTFDRVCRAIETLRSHQVEFNTLTVVNDQNWDKGRQTYEAL
ECCHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCHHHHHHHHHH
KALGSTFMQFIPLVEVDAACGCGHGHHYSPPASPQMAPFSVPAHGYGAFMADVFDAWVAH
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
DVGRYYVREFDSLLGVWMGYPASTCVQSATCGQALIIEASGDVYSCDHFVYPANRLGNVA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCEEECCCEECCHHHCCCHH
DTSLATLATSARQQRFGQAKQDRLTTRCQQCPVRQLCQGGCPKHRIMGLPDERHRHNYLC
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCCCHHCCCCCCHHHCCCCCC
PSYLHFFTHTAQAMQMMQAVIRRGGVAADVMSLGRVP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure
MMAKPASYRCNLRCSYCFYLEKEEVVPQQAGARSAETMSDTTLRRYVRDYIQSHAGEQVD
CCCCCCCCEECEEEEEEEEECHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
FAWQGGEPMLAGLPFYQKAVEYQKKYADGKIITNSFQTNGIAINSQWADFFAGSGFLIGV
EEECCCCCCEECCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCHHHHHCCCCEEEEE
SVDGLAAVHNRYRIAAQGQPTFDRVCRAIETLRSHQVEFNTLTVVNDQNWDKGRQTYEAL
ECCHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCHHHHHHHHHH
KALGSTFMQFIPLVEVDAACGCGHGHHYSPPASPQMAPFSVPAHGYGAFMADVFDAWVAH
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
DVGRYYVREFDSLLGVWMGYPASTCVQSATCGQALIIEASGDVYSCDHFVYPANRLGNVA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCEEECCCEECCHHHCCCHH
DTSLATLATSARQQRFGQAKQDRLTTRCQQCPVRQLCQGGCPKHRIMGLPDERHRHNYLC
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCCCHHCCCCCCHHHCCCCCC
PSYLHFFTHTAQAMQMMQAVIRRGGVAADVMSLGRVP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]