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The map label for this gene is ybdD [H]

Identifier: 238920677

GI number: 238920677

Start: 2683676

End: 2683873

Strand: Direct

Name: ybdD [H]

Synonym: NT01EI_2790

Alternate gene names: 238920677

Gene position: 2683676-2683873 (Clockwise)

Preceding gene: 238920676

Following gene: 238920678

Centisome position: 70.39

GC content: 61.11

Gene sequence:

>198_bases
ATGTTCGATACTCTGGCCAGGGCCGGTAAATACCTCGGGCAGGCAGCCAAGCTGATGGTCGGCGTGCCCGATTACGATAA
CTATGTCCAGCATATGCGGCTGACCCATCCCGAGCAGACGCCGATGCGCTATGAGGACTTTTTCCGCGAGCGCCAGGATG
CCCGCTACGGCGGCAAAGGCAGCACCCGCTGCTGCTGA

Upstream 100 bases:

>100_bases
CGCCGCACGGGGATAAATTACCTGAACATCCGCGTCAGGTGTGAGCGCGGCCACACCGCGTCGGTGCAGTACGTCGACGC
GGTACAACAACGGAGGAGCT

Downstream 100 bases:

>100_bases
GAGGCAGCACGCGGCGCTATTTATCCGCGGAGCGCCGACGCGCCCCGCCAACCAGGGAGAGAGCATGCAGAGCCCCGTTT
CCGTTACCCTGTTGACCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MFDTLARAGKYLGQAAKLMVGVPDYDNYVQHMRLTHPEQTPMRYEDFFRERQDARYGGKGSTRCC

Sequences:

>Translated_65_residues
MFDTLARAGKYLGQAAKLMVGVPDYDNYVQHMRLTHPEQTPMRYEDFFRERQDARYGGKGSTRCC
>Mature_65_residues
MFDTLARAGKYLGQAAKLMVGVPDYDNYVQHMRLTHPEQTPMRYEDFFRERQDARYGGKGSTRCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiX [H]

Homologues:

Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=81.5384615384615, Blast_Score=122, Evalue=4e-30,
Organism=Escherichia coli, GI1790813, Length=67, Percent_Identity=64.1791044776119, Blast_Score=97, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007423 [H]

Pfam domain/function: PF04328 DUF466 [H]

EC number: NA

Molecular weight: Translated: 7579; Mature: 7579

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
9.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
9.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDTLARAGKYLGQAAKLMVGVPDYDNYVQHMRLTHPEQTPMRYEDFFRERQDARYGGKG
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC
STRCC
CCCCC
>Mature Secondary Structure
MFDTLARAGKYLGQAAKLMVGVPDYDNYVQHMRLTHPEQTPMRYEDFFRERQDARYGGKG
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCC
STRCC
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]