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The map label for this gene is ygaV [H]

Identifier: 238920673

GI number: 238920673

Start: 2678855

End: 2679163

Strand: Reverse

Name: ygaV [H]

Synonym: NT01EI_2786

Alternate gene names: 238920673

Gene position: 2679163-2678855 (Counterclockwise)

Preceding gene: 238920674

Following gene: 238920672

Centisome position: 70.28

GC content: 65.37

Gene sequence:

>309_bases
ATGGATGTCCCCCCCCCGCTACAACAGTTGCAGGTCAGCGCCGATCGGGCGTCAGCGCTGCTGAAGGCCATGGGCCATCC
CCAGCGTCTGCTGATCCTGTGCATTCTGCTGGGGCAGCCGCGCGCCGGGGCCGGCGAACTGGCCCGCGCCGTCGGCCTAA
CGGCTTCGGCGACCTCCCAGCATCTGGCCAGGATGCGCGCCGAGGGGCTGATCGCCAGTGAGCGGGAGGGCACCCACGTA
CTCTATATGATCCAAAATCCGGCGATCGCCCAGATCATCGCCACGCTCAAAACCTACTATTGCCCATAA

Upstream 100 bases:

>100_bases
GTTTTCTCGCCGCCGCGCCGATGCCTCGACGCTTGCGCTTGTGTCGTCTTTGTTTTAGTATTTTCTTAATTAAGTGTTTG
CTAAAATAAAGGTGAAGATG

Downstream 100 bases:

>100_bases
CGGGAGGCAGCTATGCAGGTGAATACCCTTACACCGCGTCAGGCCAGCGAGATGCTGGCGCAGGGCGCCCGGCTGATCGA
TATCCGCGATGCGCAGGAGT

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MDVPPPLQQLQVSADRASALLKAMGHPQRLLILCILLGQPRAGAGELARAVGLTASATSQHLARMRAEGLIASEREGTHV
LYMIQNPAIAQIIATLKTYYCP

Sequences:

>Translated_102_residues
MDVPPPLQQLQVSADRASALLKAMGHPQRLLILCILLGQPRAGAGELARAVGLTASATSQHLARMRAEGLIASEREGTHV
LYMIQNPAIAQIIATLKTYYCP
>Mature_102_residues
MDVPPPLQQLQVSADRASALLKAMGHPQRLLILCILLGQPRAGAGELARAVGLTASATSQHLARMRAEGLIASEREGTHV
LYMIQNPAIAQIIATLKTYYCP

Specific function: Functions as transcription repressor (Probable) [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789021, Length=96, Percent_Identity=65.625, Blast_Score=127, Evalue=1e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 10929; Mature: 10929

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVPPPLQQLQVSADRASALLKAMGHPQRLLILCILLGQPRAGAGELARAVGLTASATSQ
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHH
HLARMRAEGLIASEREGTHVLYMIQNPAIAQIIATLKTYYCP
HHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDVPPPLQQLQVSADRASALLKAMGHPQRLLILCILLGQPRAGAGELARAVGLTASATSQ
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHH
HLARMRAEGLIASEREGTHVLYMIQNPAIAQIIATLKTYYCP
HHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]