| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920668
Identifier: 238920668
GI number: 238920668
Start: 2676276
End: 2677016
Strand: Direct
Name: 238920668
Synonym: NT01EI_2781
Alternate gene names: NA
Gene position: 2676276-2677016 (Clockwise)
Preceding gene: 238920665
Following gene: 238920669
Centisome position: 70.2
GC content: 53.44
Gene sequence:
>741_bases ATGAGTGCACTGTTCTTAATGGCGCAACGCTTTCCCTTCTCCGGCAATCAGGACATTTTTGGAATGAATCCATGCGTAAC CCGCGGCTATCGTAAAATAAGGCACTATCTACACGGGCGGCCACGCTTTCTCTTTTCCATACTGATGGCCACCGTCATCT ATCTCTGCCTTACGCCTTTGTTCTCTCCGGCGATCCGCCTGATGTTTGGCTGGAACGTCTTCGCCTGGCTGTACATTCTC TTTTTGCTGGCCAAAATCGTCAACCGCAAGGCCCACGATATCCGCAAAATCACCCGGCTGGAAGATGAGAGTGCCAAGAT GGTGATCTTCTTCGTCGTCATCGGCTGCTGCATCAGCGTACTGGTGCTGTTTCTGGAGCTGGCCACCGCCGGGCAGATCA GTGGCCATCAGAAGATCCTGCACTTCATTATCACCGGCTCTACGCTGCTCTCCTCCTGGCTGCTGCTGCCGATGGGCTTT ACCATGCACTACGCCCACCTGTTCTATTCCAATTCCCATCAGGAGGAGCCCTGGCTGTTGTTTCCCGACAAGATCCAGGC GCCCTCCTACTGGGACTTTATGTACTTTTCATTCACCATCGCCGTCGCCTCGCAGACCGCCGACGTCTGCGTTGGATCTC AGGAGATGCGCAAAATTGTTCTGCTGCAGTCGGTGATCTCCTTTGTATTCAACATGGCCATCCTTGGTCTGTCGATTAAC GTCTGTGCCAGCCTGTTCTAA
Upstream 100 bases:
>100_bases GGTACTTACAATCGCTCCCGATATCGGGTTCGCCACCCCACTACGGCGCTGATACGCTCGATTCATCACGGCATGGCTTC CCTGCGGCAGGATTGTTAAA
Downstream 100 bases:
>100_bases GACGGCCCCCGGAAGCGTCGTCGCGGCGCCTCCCGGTTACTTCTGCAAGAGGCCTCACACCTCATCACGCTCTCCCGCCG TATCTATTGTTTGTACAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MSALFLMAQRFPFSGNQDIFGMNPCVTRGYRKIRHYLHGRPRFLFSILMATVIYLCLTPLFSPAIRLMFGWNVFAWLYIL FLLAKIVNRKAHDIRKITRLEDESAKMVIFFVVIGCCISVLVLFLELATAGQISGHQKILHFIITGSTLLSSWLLLPMGF TMHYAHLFYSNSHQEEPWLLFPDKIQAPSYWDFMYFSFTIAVASQTADVCVGSQEMRKIVLLQSVISFVFNMAILGLSIN VCASLF
Sequences:
>Translated_246_residues MSALFLMAQRFPFSGNQDIFGMNPCVTRGYRKIRHYLHGRPRFLFSILMATVIYLCLTPLFSPAIRLMFGWNVFAWLYIL FLLAKIVNRKAHDIRKITRLEDESAKMVIFFVVIGCCISVLVLFLELATAGQISGHQKILHFIITGSTLLSSWLLLPMGF TMHYAHLFYSNSHQEEPWLLFPDKIQAPSYWDFMYFSFTIAVASQTADVCVGSQEMRKIVLLQSVISFVFNMAILGLSIN VCASLF >Mature_245_residues SALFLMAQRFPFSGNQDIFGMNPCVTRGYRKIRHYLHGRPRFLFSILMATVIYLCLTPLFSPAIRLMFGWNVFAWLYILF LLAKIVNRKAHDIRKITRLEDESAKMVIFFVVIGCCISVLVLFLELATAGQISGHQKILHFIITGSTLLSSWLLLPMGFT MHYAHLFYSNSHQEEPWLLFPDKIQAPSYWDFMYFSFTIAVASQTADVCVGSQEMRKIVLLQSVISFVFNMAILGLSINV CASLF
Specific function: Unknown
COG id: COG4291
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28176; Mature: 28045
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALFLMAQRFPFSGNQDIFGMNPCVTRGYRKIRHYLHGRPRFLFSILMATVIYLCLTPL CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH FSPAIRLMFGWNVFAWLYILFLLAKIVNRKAHDIRKITRLEDESAKMVIFFVVIGCCISV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LVLFLELATAGQISGHQKILHFIITGSTLLSSWLLLPMGFTMHYAHLFYSNSHQEEPWLL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE FPDKIQAPSYWDFMYFSFTIAVASQTADVCVGSQEMRKIVLLQSVISFVFNMAILGLSIN CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VCASLF HHHHCC >Mature Secondary Structure SALFLMAQRFPFSGNQDIFGMNPCVTRGYRKIRHYLHGRPRFLFSILMATVIYLCLTPL CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH FSPAIRLMFGWNVFAWLYILFLLAKIVNRKAHDIRKITRLEDESAKMVIFFVVIGCCISV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LVLFLELATAGQISGHQKILHFIITGSTLLSSWLLLPMGFTMHYAHLFYSNSHQEEPWLL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE FPDKIQAPSYWDFMYFSFTIAVASQTADVCVGSQEMRKIVLLQSVISFVFNMAILGLSIN CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VCASLF HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA