Definition Edwardsiella ictaluri 93-146 chromosome, complete genome.
Accession NC_012779
Length 3,812,315

Click here to switch to the map view.

The map label for this gene is 238920631

Identifier: 238920631

GI number: 238920631

Start: 2637980

End: 2639005

Strand: Direct

Name: 238920631

Synonym: NT01EI_2743

Alternate gene names: NA

Gene position: 2637980-2639005 (Clockwise)

Preceding gene: 238920630

Following gene: 238920632

Centisome position: 69.2

GC content: 59.55

Gene sequence:

>1026_bases
ATGAGCGCCCCCCAGAACCGACAGTCCGTGCTGGAGCAGCTGTATGCCCGGCCCTATGACTTCGATTTTTTTCAGGCCGT
CAGGATACTGGAGCTGCAGCAGTTAAGGTGTGGCTGCCAGGAGCTTCCGCTGCGCTTCCGTACCCATCTCTCCCTGGCTA
CCCCGGCCAGCAGTATTTATGCGCTGCAGCCCCCCGTAGCAGATCAGCCGCAGGTCATGACCATCAACTTCATGGGACTG
ACCGGCCCCTCTGGGGCATTACCGACACGGTATACCGAGATGCTGCTGGAGCGACGCCTGCAGCATCGGGATCAGACCGC
TCACCATTTTTTTGATCTGCTCAACCACCGTCTGATCACTCTGTTTTACCAGGCGTGGCGCAAACATCAGGCGACGGCTG
ATCTGGCCTGTGGCCTGCAGGCCGATTGGCGTCAGATGCTGCTCTCCCTGGCCGGTCTGGGCACGCCGGGACTACAAAAC
CGGCTGATAAAAGATGGTGTCAATGATGATGTCTTTGCCTATTACGCCGGGCGGTTCGGCGCACGCTCGCTCAGCGAGGA
GGGACTGCGCACACTGCTGACAGAGTATTTTTCCGTACCGGTTGAGATCCAGCCCTTTCAGGGACAGTGGCTGAAGCTGG
ATGAGTCGGATGTCCTGGCTCTGGGGCGTCAGAACTGCACTCTGGGAGAGTGGCCGGTACTGGGCCGGCAGGTATGGGAT
GCCCAAAGCCAGTTTAGGATCCGCCTCGGGCCGATGAACTATAAGCAGTTTCAGGCATTTTTACCGGGGGGAAAGGACTT
TCGGGCACTGACCAAGTTGGTCCGTTTTTCCATTGAAATCGCCGTAACGTTCGATATTCAGCTGGTACTGGACGCCCGTG
AGGTACCGCCCTGCACACTGGGTGATAGCCAGGCCGGAGCGGCCCGCCCCGGATGGATTGGCTGGCTGGGAGAGCGCCCC
TCCAGACTGGGCGATGCCGACGACGTGGTATTACAGGAGCCGAGGGACAGGCTGCACGCGCGATAA

Upstream 100 bases:

>100_bases
ATAGCGCCATCAACAGTTTTACCCGCCTGCATGTACGCACCCAGCAGCGGGAACAAGCGCTCAAGCGCTGGCCGCCGCGG
GCGGGTAAGGCGGTGCTGTC

Downstream 100 bases:

>100_bases
ATCGGGTGCACAGGCAAGACGCCCGGCGCCCACCGCTTATTCAGGCTGAAAGCGACCTACCACGCGATGTGACTTACATT
CATTAACGGGGAAACCTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Quinoprotein Dehydrogenase; Conserved Protein; Cytoplasmic Protein; Type VI Secretion System Protein ImpH; T6ss R; Replication/Virulence Associated Protein; Type VI Secretion System Protein; Type VI Secretion Protein VasG; Type VI Secretion System Core Protein; Type VI Secretion System Protein EvpG; Protein ImpH; Secreted Protein; Cytoplasmic Protein SciB

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIYALQPPVADQPQVMTINFMGL
TGPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLITLFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQN
RLIKDGVNDDVFAYYAGRFGARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWD
AQSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTLGDSQAGAARPGWIGWLGERP
SRLGDADDVVLQEPRDRLHAR

Sequences:

>Translated_341_residues
MSAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIYALQPPVADQPQVMTINFMGL
TGPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLITLFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQN
RLIKDGVNDDVFAYYAGRFGARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWD
AQSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTLGDSQAGAARPGWIGWLGERP
SRLGDADDVVLQEPRDRLHAR
>Mature_340_residues
SAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIYALQPPVADQPQVMTINFMGLT
GPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLITLFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQNR
LIKDGVNDDVFAYYAGRFGARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWDA
QSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTLGDSQAGAARPGWIGWLGERPS
RLGDADDVVLQEPRDRLHAR

Specific function: Unknown

COG id: COG3520

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38741; Mature: 38610

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIY
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHCCHHHHHHEEECCCCCCEE
ALQPPVADQPQVMTINFMGLTGPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLIT
EECCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQNRLIKDGVNDDVFAYYAGRFG
HHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEHHCCCC
ARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWD
CHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCHHHHCCCCCCCCCCCCCHHHHHHC
AQSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTL
CCCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHEEEEEEEEEEEEEEECCCCCCCCC
GDSQAGAARPGWIGWLGERPSRLGDADDVVLQEPRDRLHAR
CCCCCCCCCCCCEECCCCCCCCCCCCCHHHHCCCHHHCCCC
>Mature Secondary Structure 
SAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIY
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHCCHHHHHHEEECCCCCCEE
ALQPPVADQPQVMTINFMGLTGPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLIT
EECCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQNRLIKDGVNDDVFAYYAGRFG
HHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEHHCCCC
ARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWD
CHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCHHHHCCCCCCCCCCCCCHHHHHHC
AQSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTL
CCCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHEEEEEEEEEEEEEEECCCCCCCCC
GDSQAGAARPGWIGWLGERPSRLGDADDVVLQEPRDRLHAR
CCCCCCCCCCCCEECCCCCCCCCCCCCHHHHCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA