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The map label for this gene is clpV1 [H]

Identifier: 238920632

GI number: 238920632

Start: 2639125

End: 2641746

Strand: Direct

Name: clpV1 [H]

Synonym: NT01EI_2744

Alternate gene names: 238920632

Gene position: 2639125-2641746 (Clockwise)

Preceding gene: 238920631

Following gene: 238920633

Centisome position: 69.23

GC content: 61.56

Gene sequence:

>2622_bases
GTGAATACAGATTTGAAAGCCTTGACGGGGAAAATGAACCAGACCTGCCATCAAGCACTGGAGGCTGCAGCAGGCCTGTG
TCTGTCACGAGGCCATCACGAGGTCGAGATCGAACACGTGCTGCTCAAGTTGCTGGAGACGGGCAACACGGATCTGGATC
ACCTGCTGCAGCACTATGGGATCGACGCCGGCCGTTTTCAGCGGGACGTGGAGCAGGCGCTGGATCGCCTGAAGGACGGA
TGCAGCCGACAGCCGGTACTCTCCCCCCATCTGCCACGACTGTTGTCTGATGCCTGGCTGGTGGCCTCCGTCAACTGTGG
CGAGAGCCAGATCCGCAGCGGTCATCTGGTCATGGCCCTACTGGGTGACACGGTGCTGCTGCAGCTCGCCAGGGCGCTGT
CGCCAGAGTGGGCTGCGTGGTCTGCGGCAGATCTGCTGCACAAGTGGCCCGCGCTGGTCGTCGGCAGCCGGGAGGCGACG
GCGCGGCACGCGCCGGGAGTTCATGCGGGCGCCTCCCCCTCACCCGCTCTGGATCAATACACGGTAAACCTGACCGAGCG
GGCCCACCAGCATCAGCTGGACCCGGTTCTCGGGCGGGATGGCGAGATTCGGCAGATGATCGATATTTTGCTGCGCCGCA
GGCAGAACAACCCAATTCTTACCGGTGAGGCCGGCGTAGGGAAAACCGCCGTAGTGGAAGGGCTGGCCCTGCGCATTGCG
GACGGAGAGGTTCCGGATAGCCTGCGCAATGTTGCCCTACGGATGCTGGATCTGGGCCTGCTCCAGGCGGGTGCCAGTGT
CAAAGGGGAGTTTGAACGTCGTCTCAAAGCGGTCATCGACGAGGTGAAGGCCTGCAGTGAACCGGTCATTTTGTTCATCG
ATGAAGCCCATACGCTGATCGGGGCAGGAGGTGCAGCAGGTCAGAATGATGCCGCCAATCTGCTGAAGCCGGTACTGGCC
CGGGGAGAGCTGCGCACCATTGCCGCCACCACCTGGAGTGAATACAAAAAGTATTTCGAGAAAGATCCTGCTCTGGCGCG
GCGCTTCCAGGCCATCAAAGTGGAGGAGCCCAGCGAGGAGATCGCCATGGTGATGCTGCGTGGCATGCTGAGTAAAATGC
GCCAGCACCACCAGGTACGGATTCTGGATGAGGCGGTAACGGCCGCCGTCAGGCTGTCACACCGTTATTTGACCGGCAGA
CAGCTGCCGGATAAAGCGGTCAGCGTACTGGATACCGCCTGCGCCCGGATTGCGCTCGGGCAGCGTACCCTGCCAGCCCC
CGTCGAGGATGCATGCCGCCATCTGGCGCACCTCCAGACCGAAATTGCGCTGCTGGAGCAGGAGCAGGCCGGTGGCCTCG
ACCATGGTAGCCGGCTAATGACACTACAGGAGCAGGCCCGGGTCGCCCAAGACCATTATCAGACTCTGGAGCAGCGCTGG
ATCGAGGAGTGTGAGCAGGTCGCCATCATCCAGGCGCTGCAGGTGCAGTTGGAGCAGGAGGATTGTCCGGACCGCAGTGA
GATGCTGGCCCGACGGGAGCAGGCCGTTCTGGCGCTCGAGCAGATGCAGGGCCGGGAGCCGCTGGTGCAGACCTGTGTGG
ATGAGTCCGCCATTGCGGCGGTGATCTCGGCATGGACGGGGATCCCGCTGGGTAAAATGGTGCAGGATGAGCTGGAGATG
GTCCGCCAGCTACAGACACGGCTGGCAGAACGGGTCATCGGACAGCCCTATGCCCTGGATACCATCGCCCGGGGTATTCG
CCTGTCCCGTGCGGGACTGGAGGATCCGGACAAGCCCATCGGCGTCTTTCTGCTGGTCGGCTCCAGCGGCGTGGGAAAAA
CCGAGACCGCGCTGGCGCTGGCCGAAACCCTGTATGGCGGTGAGCGTAACCTGATCACCATCAACCTGTCGGAGTTTCAG
GAGGCCCATACCGTTTCGACGCTGCGGGGCTCACCGCCGGGCTATGTCGGCTATGGTGAAGGCGGTGTGCTGACAGAGGC
AGTACGCCGTAAGCCCTACAGCGTGGTCTTGCTGGATGAAGTAGAGAAAGCCCACCCGGATGTACTGGAGGTATTTTTTC
AGGTGTTTGACAAAGGGGTCATGGATGATGCCGAGGGGCGGGAGATCAACTTCCGCAATACCGTTATCCTGCTGACCTCC
AACGTCGGCAGCGATACCCTGATGGCCTACTGTCAGGACGGTATGGCACAGCCCGAACCGGAGCAGCTGTGTGAGGTGCT
GCGGGATGACCTGACCCAGGCCTTCAAGCCTGCCTTTCTCGGACGCCTGCAGGTGGTACCCTACTACCCGGTACGGGGTA
CGGTGCTGAAACAGATTATCCACCTCAAGCTGGATAAGATTGCCCGACGCTTTCAGCGCAATCATCAGGCCACTCTCCAT
TACGATGAGTCCCTGGTGGATGGCATTGCCAAACGCTGTACCCAGCCGGACAGCGGCGCCCGCCTGATCGATAATATTCT
GTCGGCCCAGCTGTTATCCGGTATGGCGGACGCGGTGCTGGCACAGATGGCCGCCGGCGAGCCGGTATCCGATATCACCA
TCGCGATGGATGAGCACGGCCGACTGACAGGATCGCTAGAGGGGAGTGAAGGATGGAATTAA

Upstream 100 bases:

>100_bases
CGCCCGGCGCCCACCGCTTATTCAGGCTGAAAGCGACCTACCACGCGATGTGACTTACATTCATTAACGGGGAAACCTGT
TTTTTCGGAGAGAGAGTTTG

Downstream 100 bases:

>100_bases
CGTCGGATAACCGGCTATTGTCCTTATCCACCCCGTTGGGCAAGAATACCTTACAGGTGGTGCAGTGCCGTGGTGAAGAG
TCGGTCTCCGACCTCTACCG

Product: type VI secretion ATPase, ClpV1 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 873; Mature: 873

Protein sequence:

>873_residues
MNTDLKALTGKMNQTCHQALEAAAGLCLSRGHHEVEIEHVLLKLLETGNTDLDHLLQHYGIDAGRFQRDVEQALDRLKDG
CSRQPVLSPHLPRLLSDAWLVASVNCGESQIRSGHLVMALLGDTVLLQLARALSPEWAAWSAADLLHKWPALVVGSREAT
ARHAPGVHAGASPSPALDQYTVNLTERAHQHQLDPVLGRDGEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA
DGEVPDSLRNVALRMLDLGLLQAGASVKGEFERRLKAVIDEVKACSEPVILFIDEAHTLIGAGGAAGQNDAANLLKPVLA
RGELRTIAATTWSEYKKYFEKDPALARRFQAIKVEEPSEEIAMVMLRGMLSKMRQHHQVRILDEAVTAAVRLSHRYLTGR
QLPDKAVSVLDTACARIALGQRTLPAPVEDACRHLAHLQTEIALLEQEQAGGLDHGSRLMTLQEQARVAQDHYQTLEQRW
IEECEQVAIIQALQVQLEQEDCPDRSEMLARREQAVLALEQMQGREPLVQTCVDESAIAAVISAWTGIPLGKMVQDELEM
VRQLQTRLAERVIGQPYALDTIARGIRLSRAGLEDPDKPIGVFLLVGSSGVGKTETALALAETLYGGERNLITINLSEFQ
EAHTVSTLRGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLEVFFQVFDKGVMDDAEGREINFRNTVILLTS
NVGSDTLMAYCQDGMAQPEPEQLCEVLRDDLTQAFKPAFLGRLQVVPYYPVRGTVLKQIIHLKLDKIARRFQRNHQATLH
YDESLVDGIAKRCTQPDSGARLIDNILSAQLLSGMADAVLAQMAAGEPVSDITIAMDEHGRLTGSLEGSEGWN

Sequences:

>Translated_873_residues
MNTDLKALTGKMNQTCHQALEAAAGLCLSRGHHEVEIEHVLLKLLETGNTDLDHLLQHYGIDAGRFQRDVEQALDRLKDG
CSRQPVLSPHLPRLLSDAWLVASVNCGESQIRSGHLVMALLGDTVLLQLARALSPEWAAWSAADLLHKWPALVVGSREAT
ARHAPGVHAGASPSPALDQYTVNLTERAHQHQLDPVLGRDGEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA
DGEVPDSLRNVALRMLDLGLLQAGASVKGEFERRLKAVIDEVKACSEPVILFIDEAHTLIGAGGAAGQNDAANLLKPVLA
RGELRTIAATTWSEYKKYFEKDPALARRFQAIKVEEPSEEIAMVMLRGMLSKMRQHHQVRILDEAVTAAVRLSHRYLTGR
QLPDKAVSVLDTACARIALGQRTLPAPVEDACRHLAHLQTEIALLEQEQAGGLDHGSRLMTLQEQARVAQDHYQTLEQRW
IEECEQVAIIQALQVQLEQEDCPDRSEMLARREQAVLALEQMQGREPLVQTCVDESAIAAVISAWTGIPLGKMVQDELEM
VRQLQTRLAERVIGQPYALDTIARGIRLSRAGLEDPDKPIGVFLLVGSSGVGKTETALALAETLYGGERNLITINLSEFQ
EAHTVSTLRGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLEVFFQVFDKGVMDDAEGREINFRNTVILLTS
NVGSDTLMAYCQDGMAQPEPEQLCEVLRDDLTQAFKPAFLGRLQVVPYYPVRGTVLKQIIHLKLDKIARRFQRNHQATLH
YDESLVDGIAKRCTQPDSGARLIDNILSAQLLSGMADAVLAQMAAGEPVSDITIAMDEHGRLTGSLEGSEGWN
>Mature_873_residues
MNTDLKALTGKMNQTCHQALEAAAGLCLSRGHHEVEIEHVLLKLLETGNTDLDHLLQHYGIDAGRFQRDVEQALDRLKDG
CSRQPVLSPHLPRLLSDAWLVASVNCGESQIRSGHLVMALLGDTVLLQLARALSPEWAAWSAADLLHKWPALVVGSREAT
ARHAPGVHAGASPSPALDQYTVNLTERAHQHQLDPVLGRDGEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA
DGEVPDSLRNVALRMLDLGLLQAGASVKGEFERRLKAVIDEVKACSEPVILFIDEAHTLIGAGGAAGQNDAANLLKPVLA
RGELRTIAATTWSEYKKYFEKDPALARRFQAIKVEEPSEEIAMVMLRGMLSKMRQHHQVRILDEAVTAAVRLSHRYLTGR
QLPDKAVSVLDTACARIALGQRTLPAPVEDACRHLAHLQTEIALLEQEQAGGLDHGSRLMTLQEQARVAQDHYQTLEQRW
IEECEQVAIIQALQVQLEQEDCPDRSEMLARREQAVLALEQMQGREPLVQTCVDESAIAAVISAWTGIPLGKMVQDELEM
VRQLQTRLAERVIGQPYALDTIARGIRLSRAGLEDPDKPIGVFLLVGSSGVGKTETALALAETLYGGERNLITINLSEFQ
EAHTVSTLRGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLEVFFQVFDKGVMDDAEGREINFRNTVILLTS
NVGSDTLMAYCQDGMAQPEPEQLCEVLRDDLTQAFKPAFLGRLQVVPYYPVRGTVLKQIIHLKLDKIARRFQRNHQATLH
YDESLVDGIAKRCTQPDSGARLIDNILSAQLLSGMADAVLAQMAAGEPVSDITIAMDEHGRLTGSLEGSEGWN

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=321, Percent_Identity=34.2679127725857, Blast_Score=169, Evalue=1e-41,
Organism=Escherichia coli, GI1788943, Length=860, Percent_Identity=38.953488372093, Blast_Score=550, Evalue=1e-157,
Organism=Escherichia coli, GI1787109, Length=446, Percent_Identity=33.8565022421525, Blast_Score=238, Evalue=1e-63,
Organism=Saccharomyces cerevisiae, GI6320464, Length=700, Percent_Identity=40.1428571428571, Blast_Score=468, Evalue=1e-132,
Organism=Saccharomyces cerevisiae, GI6323002, Length=855, Percent_Identity=33.9181286549708, Blast_Score=453, Evalue=1e-128,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 95839; Mature: 95839

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTDLKALTGKMNQTCHQALEAAAGLCLSRGHHEVEIEHVLLKLLETGNTDLDHLLQHYG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHC
IDAGRFQRDVEQALDRLKDGCSRQPVLSPHLPRLLSDAWLVASVNCGESQIRSGHLVMAL
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEECCCCHHHHCCCCCHHHH
LGDTVLLQLARALSPEWAAWSAADLLHKWPALVVGSREATARHAPGVHAGASPSPALDQY
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHEECCCHHHHCCCCCCCCCCCCCCCCHHH
TVNLTERAHQHQLDPVLGRDGEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA
EEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHEEEE
DGEVPDSLRNVALRMLDLGLLQAGASVKGEFERRLKAVIDEVKACSEPVILFIDEAHTLI
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHE
GAGGAAGQNDAANLLKPVLARGELRTIAATTWSEYKKYFEKDPALARRFQAIKVEEPSEE
ECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHH
IAMVMLRGMLSKMRQHHQVRILDEAVTAAVRLSHRYLTGRQLPDKAVSVLDTACARIALG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
QRTLPAPVEDACRHLAHLQTEIALLEQEQAGGLDHGSRLMTLQEQARVAQDHYQTLEQRW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IEECEQVAIIQALQVQLEQEDCPDRSEMLARREQAVLALEQMQGREPLVQTCVDESAIAA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHH
VISAWTGIPLGKMVQDELEMVRQLQTRLAERVIGQPYALDTIARGIRLSRAGLEDPDKPI
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
GVFLLVGSSGVGKTETALALAETLYGGERNLITINLSEFQEAHTVSTLRGSPPGYVGYGE
EEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEECCCC
GGVLTEAVRRKPYSVVLLDEVEKAHPDVLEVFFQVFDKGVMDDAEGREINFRNTVILLTS
CCHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEEC
NVGSDTLMAYCQDGMAQPEPEQLCEVLRDDLTQAFKPAFLGRLQVVPYYPVRGTVLKQII
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHH
HLKLDKIARRFQRNHQATLHYDESLVDGIAKRCTQPDSGARLIDNILSAQLLSGMADAVL
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AQMAAGEPVSDITIAMDEHGRLTGSLEGSEGWN
HHHHCCCCCCCEEEEECCCCCEEEECCCCCCCC
>Mature Secondary Structure
MNTDLKALTGKMNQTCHQALEAAAGLCLSRGHHEVEIEHVLLKLLETGNTDLDHLLQHYG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHC
IDAGRFQRDVEQALDRLKDGCSRQPVLSPHLPRLLSDAWLVASVNCGESQIRSGHLVMAL
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEECCCCHHHHCCCCCHHHH
LGDTVLLQLARALSPEWAAWSAADLLHKWPALVVGSREATARHAPGVHAGASPSPALDQY
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHEECCCHHHHCCCCCCCCCCCCCCCCHHH
TVNLTERAHQHQLDPVLGRDGEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA
EEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHEEEE
DGEVPDSLRNVALRMLDLGLLQAGASVKGEFERRLKAVIDEVKACSEPVILFIDEAHTLI
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHE
GAGGAAGQNDAANLLKPVLARGELRTIAATTWSEYKKYFEKDPALARRFQAIKVEEPSEE
ECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHH
IAMVMLRGMLSKMRQHHQVRILDEAVTAAVRLSHRYLTGRQLPDKAVSVLDTACARIALG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
QRTLPAPVEDACRHLAHLQTEIALLEQEQAGGLDHGSRLMTLQEQARVAQDHYQTLEQRW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IEECEQVAIIQALQVQLEQEDCPDRSEMLARREQAVLALEQMQGREPLVQTCVDESAIAA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHH
VISAWTGIPLGKMVQDELEMVRQLQTRLAERVIGQPYALDTIARGIRLSRAGLEDPDKPI
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
GVFLLVGSSGVGKTETALALAETLYGGERNLITINLSEFQEAHTVSTLRGSPPGYVGYGE
EEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEECCCC
GGVLTEAVRRKPYSVVLLDEVEKAHPDVLEVFFQVFDKGVMDDAEGREINFRNTVILLTS
CCHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEEC
NVGSDTLMAYCQDGMAQPEPEQLCEVLRDDLTQAFKPAFLGRLQVVPYYPVRGTVLKQII
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHH
HLKLDKIARRFQRNHQATLHYDESLVDGIAKRCTQPDSGARLIDNILSAQLLSGMADAVL
HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AQMAAGEPVSDITIAMDEHGRLTGSLEGSEGWN
HHHHCCCCCCCEEEEECCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]