Click here to switch to the map view.

The map label for this gene is yfcD [H]

Identifier: 238920594

GI number: 238920594

Start: 2601273

End: 2601791

Strand: Reverse

Name: yfcD [H]

Synonym: NT01EI_2706

Alternate gene names: 238920594

Gene position: 2601791-2601273 (Counterclockwise)

Preceding gene: 238920595

Following gene: 238920593

Centisome position: 68.25

GC content: 58.19

Gene sequence:

>519_bases
ATGGTGGACCAGCAGGTTAACAGCGAGATTGAGTGGGTAGACATCGTTGATGAAAATAACGAAGTTATCGCTCAGGCCAG
CCGCCAGCAGATGCGGGCACAGTGTTTGCGTCATCGTGCCACCTACATTGTGGTGCATAACGGGATGGGTAAGATCCTGG
TGCAGCAGAGAACCGAGGGTAAGGATTACTATCCTGCCTGGATGGACGCCACCGCTGGCGGTGTGGTGCAGAGTGGAGAG
AATATGCTGGAGTCGGCACGCCGTGAGGCGGAGGAGGAGCTGGGTATCGCCGGAGTGCCTTTCGCCGATCATGGTCTGTT
CTACTATGAGCAGGCCGCATGTCGGGTCTGGGGCGGGCTGTTTAGCTGCGTCTCCCATGGACCCTTTGCCTTGCAGGAGA
GCGAGGTCGCATCCGTATGCTGGATGACGCCGCAGGAGATCGCCGAACGTTGCGATAGCTTTACCCCGGACTCTATCCGG
GCGTTGTCGCTGTGGATGGCGCGCAACAGTGACGGATAA

Upstream 100 bases:

>100_bases
AAGATTATCTTTTTTGGCAAGGGGCCAGGCCGCCCGCGTCGGTGGTGATGGCATCGTGGCGCAGTAGCGCCGTTGAGAAT
CAGTAATAGGGTAGCAGAGG

Downstream 100 bases:

>100_bases
GCACCGATGCTGAGCATCTGCTGTGGTGTCGATGACGGTCCCGCAGGGCCGATCGTTCGAGCTTAACGTAAGCTAAGCGT
GGCAAATTAGCATTTGCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MVDQQVNSEIEWVDIVDENNEVIAQASRQQMRAQCLRHRATYIVVHNGMGKILVQQRTEGKDYYPAWMDATAGGVVQSGE
NMLESARREAEEELGIAGVPFADHGLFYYEQAACRVWGGLFSCVSHGPFALQESEVASVCWMTPQEIAERCDSFTPDSIR
ALSLWMARNSDG

Sequences:

>Translated_172_residues
MVDQQVNSEIEWVDIVDENNEVIAQASRQQMRAQCLRHRATYIVVHNGMGKILVQQRTEGKDYYPAWMDATAGGVVQSGE
NMLESARREAEEELGIAGVPFADHGLFYYEQAACRVWGGLFSCVSHGPFALQESEVASVCWMTPQEIAERCDSFTPDSIR
ALSLWMARNSDG
>Mature_172_residues
MVDQQVNSEIEWVDIVDENNEVIAQASRQQMRAQCLRHRATYIVVHNGMGKILVQQRTEGKDYYPAWMDATAGGVVQSGE
NMLESARREAEEELGIAGVPFADHGLFYYEQAACRVWGGLFSCVSHGPFALQESEVASVCWMTPQEIAERCDSFTPDSIR
ALSLWMARNSDG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1788637, Length=169, Percent_Identity=74.5562130177515, Blast_Score=256, Evalue=6e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 3.6.-.- [C]

Molecular weight: Translated: 19250; Mature: 19250

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDQQVNSEIEWVDIVDENNEVIAQASRQQMRAQCLRHRATYIVVHNGMGKILVQQRTEG
CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCC
KDYYPAWMDATAGGVVQSGENMLESARREAEEELGIAGVPFADHGLFYYEQAACRVWGGL
CCCCCHHHCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
FSCVSHGPFALQESEVASVCWMTPQEIAERCDSFTPDSIRALSLWMARNSDG
HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVDQQVNSEIEWVDIVDENNEVIAQASRQQMRAQCLRHRATYIVVHNGMGKILVQQRTEG
CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCC
KDYYPAWMDATAGGVVQSGENMLESARREAEEELGIAGVPFADHGLFYYEQAACRVWGGL
CCCCCHHHCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
FSCVSHGPFALQESEVASVCWMTPQEIAERCDSFTPDSIRALSLWMARNSDG
HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]