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The map label for this gene is hybB [H]

Identifier: 238920546

GI number: 238920546

Start: 2552410

End: 2553600

Strand: Reverse

Name: hybB [H]

Synonym: NT01EI_2658

Alternate gene names: 238920546

Gene position: 2553600-2552410 (Counterclockwise)

Preceding gene: 238920547

Following gene: 238920545

Centisome position: 66.98

GC content: 56.84

Gene sequence:

>1191_bases
ATGAGTGAGCATAAAGCCAGTCCGCTCGGCGGGCGTCTGGTCAGTTGGCCCGTCGTGTTGCTGGCCCCGTTCATCCTGCT
GTGCGGGATGTTTATCCTGAAACGTTTGATCTTTGGCATCGGCTCTGTCGCCGATCTGAACGGGGGATATCCCTGGGGGA
TCTGGATCGCCTTCGACCTGCTGATCGGCACCGGCTTTGCCTGTGGCGGCTGGGCGTTGGCCTGGGCGGTGTATGTGTTT
AACCGCGGCGAGTATCATCCGTTGGTGCGCCCGGCGTTGCTGGCCAGCCTGTTCGGTTACTCCCTCGGCGGCCTTTCCAT
CACCATCGACGTCGGTCGTTACTGGAATCTGCCGTACTTCTACATTCCGGGGCACTTCAACACCTCCTCGGTACTGTTCG
AGACGGCGGTCTGTATGACGGTGTACATCGGTGTCATGGCGCTGGAGTTCGCACCGGTGATCCTGGAGCGCTTCGGGTGG
AAAGTGTCGCTGAAACGACTGAATAAAGTGATGTTCTTTATTCTGGCGTTGGGTGCGCTGCTGCCGACCATGCACCAGTC
CTCTATGGGATCGCTGATGATCTCTGCCGGGAAGAAGGTGCATCCGCTGTGGCAAAGTTATGAGCTGCTGCCGTTACTGT
CGGTGCTGACAGCCTTTATCATGGGCTTCGCCATCGTGGTTTTTGAAGGTTCGCTGGTGCAGGCGGGGTTGCGGGGCCGC
GGTCCGGATGAGAAAACCCTGTTTGCCAAGCTGGTGCGGGTGATCCAGGTATTCCTGCTGCTGTTCCTGGTGCTGCGCTT
CGGCGAACTGGCGATGCATGATAAACTGCATTACCTGTTCCAGTTCGACCGCTACTCCGTCAGCTTTTGGTGTGAGGCCA
TGCTGATGCTGTTCCCGCTGCTGGCATTCTGCTCTGCGCGCTGCCGTAAAGATTCACGCATTCTGTTTGTCGGCGCGCTG
AGCATGTTGCTCGGCTCGGCACTGTGGCGCTTGAACTACTCGTTGCTGGCCTTTATGCCGGGTAACGGCTACGGATATTT
TCCAACCTCTGAAGAGGTGCTGATTTCAATGGGCTTCGTGGCTATTGAAGTCGTTGCTTATTTGCTGCTGATCCGGTTGC
TGCCGGTGTTGCCAGCGCTTGACCATTTAAAACACCAAGGTTATCAGGCCCAAGGGAAAGCTAAAGTATGA

Upstream 100 bases:

>100_bases
ACGCTGTACAAAGGCATGATCCTGCCGTTGGTGGTCCTGGCCGGTCTTTCGGTAATGACCTATCGAAACACCAAGAATCA
CCATGACGGAGACGATGATA

Downstream 100 bases:

>100_bases
GCCAACGTATTACTATCGACCCGATTACCCGCATCGAGGGCCATCTGCGCATTGACTGCGAGATCGAAAACGGCAAAGTG
ACTAAAGCCTGGTCATCCGG

Product: hydrogenase 2 b cytochrome subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSEHKASPLGGRLVSWPVVLLAPFILLCGMFILKRLIFGIGSVADLNGGYPWGIWIAFDLLIGTGFACGGWALAWAVYVF
NRGEYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNTSSVLFETAVCMTVYIGVMALEFAPVILERFGW
KVSLKRLNKVMFFILALGALLPTMHQSSMGSLMISAGKKVHPLWQSYELLPLLSVLTAFIMGFAIVVFEGSLVQAGLRGR
GPDEKTLFAKLVRVIQVFLLLFLVLRFGELAMHDKLHYLFQFDRYSVSFWCEAMLMLFPLLAFCSARCRKDSRILFVGAL
SMLLGSALWRLNYSLLAFMPGNGYGYFPTSEEVLISMGFVAIEVVAYLLLIRLLPVLPALDHLKHQGYQAQGKAKV

Sequences:

>Translated_396_residues
MSEHKASPLGGRLVSWPVVLLAPFILLCGMFILKRLIFGIGSVADLNGGYPWGIWIAFDLLIGTGFACGGWALAWAVYVF
NRGEYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNTSSVLFETAVCMTVYIGVMALEFAPVILERFGW
KVSLKRLNKVMFFILALGALLPTMHQSSMGSLMISAGKKVHPLWQSYELLPLLSVLTAFIMGFAIVVFEGSLVQAGLRGR
GPDEKTLFAKLVRVIQVFLLLFLVLRFGELAMHDKLHYLFQFDRYSVSFWCEAMLMLFPLLAFCSARCRKDSRILFVGAL
SMLLGSALWRLNYSLLAFMPGNGYGYFPTSEEVLISMGFVAIEVVAYLLLIRLLPVLPALDHLKHQGYQAQGKAKV
>Mature_395_residues
SEHKASPLGGRLVSWPVVLLAPFILLCGMFILKRLIFGIGSVADLNGGYPWGIWIAFDLLIGTGFACGGWALAWAVYVFN
RGEYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNTSSVLFETAVCMTVYIGVMALEFAPVILERFGWK
VSLKRLNKVMFFILALGALLPTMHQSSMGSLMISAGKKVHPLWQSYELLPLLSVLTAFIMGFAIVVFEGSLVQAGLRGRG
PDEKTLFAKLVRVIQVFLLLFLVLRFGELAMHDKLHYLFQFDRYSVSFWCEAMLMLFPLLAFCSARCRKDSRILFVGALS
MLLGSALWRLNYSLLAFMPGNGYGYFPTSEEVLISMGFVAIEVVAYLLLIRLLPVLPALDHLKHQGYQAQGKAKV

Specific function: Probable b-type cytochrome [H]

COG id: COG5557

COG function: function code C; Polysulphide reductase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI2367183, Length=391, Percent_Identity=74.1687979539642, Blast_Score=583, Evalue=1e-168,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 44151; Mature: 44020

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEHKASPLGGRLVSWPVVLLAPFILLCGMFILKRLIFGIGSVADLNGGYPWGIWIAFDL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
LIGTGFACGGWALAWAVYVFNRGEYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYF
HHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCEECCCEE
YIPGHFNTSSVLFETAVCMTVYIGVMALEFAPVILERFGWKVSLKRLNKVMFFILALGAL
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LPTMHQSSMGSLMISAGKKVHPLWQSYELLPLLSVLTAFIMGFAIVVFEGSLVQAGLRGR
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC
GPDEKTLFAKLVRVIQVFLLLFLVLRFGELAMHDKLHYLFQFDRYSVSFWCEAMLMLFPL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LAFCSARCRKDSRILFVGALSMLLGSALWRLNYSLLAFMPGNGYGYFPTSEEVLISMGFV
HHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHH
AIEVVAYLLLIRLLPVLPALDHLKHQGYQAQGKAKV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SEHKASPLGGRLVSWPVVLLAPFILLCGMFILKRLIFGIGSVADLNGGYPWGIWIAFDL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH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HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8021226; 9278503 [H]