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The map label for this gene is ndpA [C]

Identifier: 238920498

GI number: 238920498

Start: 2499108

End: 2500064

Strand: Reverse

Name: ndpA [C]

Synonym: NT01EI_2609

Alternate gene names: 238920498

Gene position: 2500064-2499108 (Counterclockwise)

Preceding gene: 238920501

Following gene: 238920493

Centisome position: 65.58

GC content: 58.73

Gene sequence:

>957_bases
ATGAGCAACAGTTGGATGTGGTGCTGCGCGACTCGTTGCTGGAAAAAGAGCGCCGCCGTTGATGAGATGATGGCGGAGCT
ACACCGGGTCTACAGCGCCAAAAGCAAGGCGTATGGCACCTTTAACCCGGAGAGCGAGCTGGCGCAGGCGCTGACTCACT
ACCGCAAGGGAGAGGATAGCTTCCTGGCGTTTAGCCGTGCGGCGACCGGTCGCCTGCGCGATGAACTGGCCAAATATCCG
TTTGCCGAGGGTGGGATCGTGCTGTTCTGCCAGTATCGCTATCTGGCAGTGGATTACCTGCTGGTCGCAGTACTCAATAA
TTGCAGCAGCATGCGGGTGAACGAACGACTGGATCTGAGCACCACCCATTATCTGGACATTATGCATGCCGACATCGTCG
CGCGTATCGATATGACCGAATGGGAGACCAACCCACAGTCCCAGCGTTACCTCTCGTATCTGAAAGGCCGGGTGGGGCGC
AAGGTGGCCGATTTCTTTATGGACTTTTTAGGCGCTCAGGCGGGGCTGGATACCAAGGTGCAGAATCGCGGCCTGCTGCA
GGCGGTGAGCGATTACTGTAGTGAAGGCCAGTTGGATAAAAACGAGCGTCAGGCCTGCCGTAAACAGGTGTATGACTATT
GTAATGAACAACTGCAGGCGGGGGAGGATATTGCGCTGGAGGCGCTGTCGCGGGAGATCCCCAGCGTCGGGGATATGGAC
TTTCAGCAGTTCACCGCCGAGCGTGGCTACGCGCTGGAGGAGAGCTTCCCCGCGGATCGCAGTACGCTGCGTCAGCTGAC
CAAGTTTGCCGGCAGTGGCGGTGGCCTGACGATTAACTTTGACGCCCTGCTGCTGGGGGAGCGTATCTTTTGGGATGCGC
AGACCGATACCCTGACGATCAAGGGGACGCCGCCTAACCTGCGCGATCAGCTGCAGCGCAACGGCGGCGCGCGTTAA

Upstream 100 bases:

>100_bases
ACGGTGCTTGAATACGCGCCTGTATCAGGCTGAGGACAACAGGAGCAAACGATGAGTCTGGATCTGGAGAACATCGCGCT
ACATCAATTGGTTAAACGCG

Downstream 100 bases:

>100_bases
CGGCGAAGGGCGCGTACAACGCGCCTTTTTCCCGCGCGAACCATAAAAAAAAACGCCGCAGAGCGGCGTTTTTTTTATCA
TCTGACGCGAACGGGCGATT

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSNSWMWCCATRCWKKSAAVDEMMAELHRVYSAKSKAYGTFNPESELAQALTHYRKGEDSFLAFSRAATGRLRDELAKYP
FAEGGIVLFCQYRYLAVDYLLVAVLNNCSSMRVNERLDLSTTHYLDIMHADIVARIDMTEWETNPQSQRYLSYLKGRVGR
KVADFFMDFLGAQAGLDTKVQNRGLLQAVSDYCSEGQLDKNERQACRKQVYDYCNEQLQAGEDIALEALSREIPSVGDMD
FQQFTAERGYALEESFPADRSTLRQLTKFAGSGGGLTINFDALLLGERIFWDAQTDTLTIKGTPPNLRDQLQRNGGAR

Sequences:

>Translated_318_residues
MSNSWMWCCATRCWKKSAAVDEMMAELHRVYSAKSKAYGTFNPESELAQALTHYRKGEDSFLAFSRAATGRLRDELAKYP
FAEGGIVLFCQYRYLAVDYLLVAVLNNCSSMRVNERLDLSTTHYLDIMHADIVARIDMTEWETNPQSQRYLSYLKGRVGR
KVADFFMDFLGAQAGLDTKVQNRGLLQAVSDYCSEGQLDKNERQACRKQVYDYCNEQLQAGEDIALEALSREIPSVGDMD
FQQFTAERGYALEESFPADRSTLRQLTKFAGSGGGLTINFDALLLGERIFWDAQTDTLTIKGTPPNLRDQLQRNGGAR
>Mature_317_residues
SNSWMWCCATRCWKKSAAVDEMMAELHRVYSAKSKAYGTFNPESELAQALTHYRKGEDSFLAFSRAATGRLRDELAKYPF
AEGGIVLFCQYRYLAVDYLLVAVLNNCSSMRVNERLDLSTTHYLDIMHADIVARIDMTEWETNPQSQRYLSYLKGRVGRK
VADFFMDFLGAQAGLDTKVQNRGLLQAVSDYCSEGQLDKNERQACRKQVYDYCNEQLQAGEDIALEALSREIPSVGDMDF
QQFTAERGYALEESFPADRSTLRQLTKFAGSGGGLTINFDALLLGERIFWDAQTDTLTIKGTPPNLRDQLQRNGGAR

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family [H]

Homologues:

Organism=Escherichia coli, GI1788513, Length=299, Percent_Identity=76.9230769230769, Blast_Score=485, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007358 [H]

Pfam domain/function: PF04245 NA37 [H]

EC number: NA

Molecular weight: Translated: 35977; Mature: 35846

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSWMWCCATRCWKKSAAVDEMMAELHRVYSAKSKAYGTFNPESELAQALTHYRKGEDS
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCH
FLAFSRAATGRLRDELAKYPFAEGGIVLFCQYRYLAVDYLLVAVLNNCSSMRVNERLDLS
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
TTHYLDIMHADIVARIDMTEWETNPQSQRYLSYLKGRVGRKVADFFMDFLGAQAGLDTKV
HHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QNRGLLQAVSDYCSEGQLDKNERQACRKQVYDYCNEQLQAGEDIALEALSREIPSVGDMD
HHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCH
FQQFTAERGYALEESFPADRSTLRQLTKFAGSGGGLTINFDALLLGERIFWDAQTDTLTI
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHCCHHEEECCCCEEEE
KGTPPNLRDQLQRNGGAR
ECCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
SNSWMWCCATRCWKKSAAVDEMMAELHRVYSAKSKAYGTFNPESELAQALTHYRKGEDS
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCH
FLAFSRAATGRLRDELAKYPFAEGGIVLFCQYRYLAVDYLLVAVLNNCSSMRVNERLDLS
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
TTHYLDIMHADIVARIDMTEWETNPQSQRYLSYLKGRVGRKVADFFMDFLGAQAGLDTKV
HHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QNRGLLQAVSDYCSEGQLDKNERQACRKQVYDYCNEQLQAGEDIALEALSREIPSVGDMD
HHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCH
FQQFTAERGYALEESFPADRSTLRQLTKFAGSGGGLTINFDALLLGERIFWDAQTDTLTI
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHCCHHEEECCCCEEEE
KGTPPNLRDQLQRNGGAR
ECCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA